Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC010947.1-201ENST00000623454 693 ntBASIC15.38■□□□□ 0.05
NKX3-1Q99801 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 AC097493.4-201ENST00000641197 219 ntBASIC15.38■□□□□ 0.05
NKX3-1Q99801 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.38■□□□□ 0.05
NKX3-1Q99801 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NKX3-1Q99801 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.37■□□□□ 0.05
NKX3-1Q99801 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 MIR1224-201ENST00000408193 85 ntBASIC15.37■□□□□ 0.05
NKX3-1Q99801 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 FAM87A-204ENST00000613235 858 ntBASIC15.37■□□□□ 0.05
NKX3-1Q99801 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 CLN6-221ENST00000637494 765 ntTSL 5 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 PCDH8P1-201ENST00000428983 2773 ntBASIC15.37■□□□□ 0.05
NKX3-1Q99801 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 KRT18P22-201ENST00000402024 1347 ntBASIC15.37■□□□□ 0.05
NKX3-1Q99801 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.37■□□□□ 0.05
NKX3-1Q99801 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
NKX3-1Q99801 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 KRT8P47-201ENST00000604727 1398 ntBASIC15.36■□□□□ 0.05
NKX3-1Q99801 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 HLA-J-201ENST00000462773 1622 ntBASIC15.36■□□□□ 0.05
NKX3-1Q99801 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 GAD2-202ENST00000376248 680 ntTSL 5 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 MIR3917-201ENST00000580971 93 ntBASIC15.36■□□□□ 0.05
NKX3-1Q99801 AC145285.6-201ENST00000604632 637 ntBASIC15.36■□□□□ 0.05
NKX3-1Q99801 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 AC010653.2-201ENST00000623505 997 ntBASIC15.36■□□□□ 0.05
NKX3-1Q99801 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 AC060834.1-201ENST00000443027 2032 ntBASIC15.36■□□□□ 0.05
NKX3-1Q99801 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.36■□□□□ 0.05
NKX3-1Q99801 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
NKX3-1Q99801 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
NKX3-1Q99801 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
NKX3-1Q99801 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms