Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
DEPDC4Q8N2C3 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
DEPDC4Q8N2C3 NFIC-211ENST00000641145 8399 ntBASIC16.41■□□□□ 0.22
DEPDC4Q8N2C3 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 AC104076.2-201ENST00000448912 469 ntBASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
DEPDC4Q8N2C3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
DEPDC4Q8N2C3 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
DEPDC4Q8N2C3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.39■□□□□ 0.22
DEPDC4Q8N2C3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 HLA-J-201ENST00000462773 1622 ntBASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 RNF152P1-201ENST00000397754 604 ntBASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 KRT18P35-201ENST00000510488 1269 ntBASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 AC087388.1-201ENST00000571370 1112 ntBASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 AL445228.2-201ENST00000605589 952 ntBASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 AL162727.3-201ENST00000635661 2787 ntBASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
DEPDC4Q8N2C3 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 KRT8P7-201ENST00000533003 1432 ntBASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms