Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 AC116353.5-201ENST00000638148 1699 ntBASIC10.95□□□□□ -0.66
LINC00643Q86TS7 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 MYLKP1-201ENST00000509077 1580 ntBASIC10.94□□□□□ -0.66
LINC00643Q86TS7 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LINC00643Q86TS7 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 AC124283.5-201ENST00000624661 1809 ntBASIC10.93□□□□□ -0.66
LINC00643Q86TS7 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 ZNRF2P2-203ENST00000454624 420 ntBASIC10.93□□□□□ -0.66
LINC00643Q86TS7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC10.93□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms