Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 AL732292.2-201ENST00000609649 430 ntBASIC21.23■□□□□ 0.99
VPS53Q5VIR6 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 AL645608.8-201ENST00000606034 2086 ntBASIC21.23■□□□□ 0.99
VPS53Q5VIR6 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.23■□□□□ 0.99
VPS53Q5VIR6 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.22■□□□□ 0.99
VPS53Q5VIR6 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 LTB4R2-202ENST00000528054 3092 ntBASIC21.22■□□□□ 0.99
VPS53Q5VIR6 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 NUS1P2-201ENST00000417358 873 ntBASIC21.22■□□□□ 0.99
VPS53Q5VIR6 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 NUS1P1-201ENST00000446295 882 ntBASIC21.22■□□□□ 0.99
VPS53Q5VIR6 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 AC011467.2-201ENST00000598425 242 ntBASIC21.22■□□□□ 0.99
VPS53Q5VIR6 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS53Q5VIR6 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 DDX43P3-201ENST00000441064 443 ntBASIC21.21■□□□□ 0.99
VPS53Q5VIR6 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.21■□□□□ 0.99
VPS53Q5VIR6 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 AC139713.2-201ENST00000641328 2723 ntBASIC21.21■□□□□ 0.99
VPS53Q5VIR6 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 AC133963.1-201ENST00000504166 1679 ntBASIC21.21■□□□□ 0.99
VPS53Q5VIR6 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.21■□□□□ 0.99
VPS53Q5VIR6 SIRPAP1-201ENST00000448467 1770 ntBASIC21.2■□□□□ 0.99
VPS53Q5VIR6 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
VPS53Q5VIR6 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 INTS4P1-201ENST00000438455 1935 ntBASIC21.2■□□□□ 0.98
VPS53Q5VIR6 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms