Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.33■■□□□ 1.01
CCDC88AQ3V6T2 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC88AQ3V6T2 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC88AQ3V6T2 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.33■■□□□ 1
CCDC88AQ3V6T2 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.33■■□□□ 1
CCDC88AQ3V6T2 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.33■■□□□ 1
CCDC88AQ3V6T2 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.33■■□□□ 1
CCDC88AQ3V6T2 OR8S1-201ENST00000310194 1080 ntBASIC21.32■■□□□ 1
CCDC88AQ3V6T2 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AC055876.3-201ENST00000431496 288 ntBASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AL135744.1-201ENST00000565098 629 ntBASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 LINC02560-201ENST00000596379 459 ntBASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AC019129.2-201ENST00000609837 1235 ntBASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AC138649.4-201ENST00000612222 287 ntBASIC21.32■■□□□ 1
CCDC88AQ3V6T2 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC88AQ3V6T2 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC88AQ3V6T2 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 CXCL1P1-201ENST00000502804 216 ntBASIC21.3■■□□□ 1
CCDC88AQ3V6T2 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AC112191.1-201ENST00000523689 701 ntBASIC21.3■■□□□ 1
CCDC88AQ3V6T2 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AL049757.1-201ENST00000616842 1596 ntBASIC21.3■■□□□ 1
CCDC88AQ3V6T2 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AC087163.2-201ENST00000457299 853 ntBASIC21.3■■□□□ 1
CCDC88AQ3V6T2 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms