Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.45□□□□□ -0.42
COL7A1Q02388 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC12.45□□□□□ -0.42
COL7A1Q02388 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
COL7A1Q02388 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
COL7A1Q02388 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC12.45□□□□□ -0.42
COL7A1Q02388 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC12.45□□□□□ -0.42
COL7A1Q02388 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC12.45□□□□□ -0.42
COL7A1Q02388 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.45□□□□□ -0.42
COL7A1Q02388 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC12.45□□□□□ -0.42
COL7A1Q02388 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC12.45□□□□□ -0.42
COL7A1Q02388 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC12.45□□□□□ -0.42
COL7A1Q02388 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
COL7A1Q02388 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC12.45□□□□□ -0.42
COL7A1Q02388 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.45□□□□□ -0.42
COL7A1Q02388 AC009336.1-201ENST00000608941 1553 ntBASIC12.45□□□□□ -0.42
COL7A1Q02388 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC12.45□□□□□ -0.42
COL7A1Q02388 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL7A1Q02388 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.45□□□□□ -0.42
COL7A1Q02388 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.44□□□□□ -0.42
COL7A1Q02388 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
COL7A1Q02388 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.44□□□□□ -0.42
COL7A1Q02388 SPTSSB-204ENST00000617024 1292 ntBASIC12.44□□□□□ -0.42
COL7A1Q02388 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC12.44□□□□□ -0.42
COL7A1Q02388 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 PGF-202ENST00000405431 666 ntTSL 5 BASIC12.44□□□□□ -0.42
COL7A1Q02388 AC004945.1-201ENST00000416738 983 ntBASIC12.44□□□□□ -0.42
COL7A1Q02388 SPDYE14P-201ENST00000442619 822 ntBASIC12.44□□□□□ -0.42
COL7A1Q02388 GPR53P-205ENST00000457298 1084 ntBASIC12.44□□□□□ -0.42
COL7A1Q02388 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
COL7A1Q02388 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC12.44□□□□□ -0.42
COL7A1Q02388 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 AKAP8P1-201ENST00000434743 1349 ntBASIC12.44□□□□□ -0.42
COL7A1Q02388 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.44□□□□□ -0.42
COL7A1Q02388 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
COL7A1Q02388 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC12.44□□□□□ -0.42
COL7A1Q02388 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.44□□□□□ -0.42
COL7A1Q02388 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC12.44□□□□□ -0.42
COL7A1Q02388 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.44□□□□□ -0.42
COL7A1Q02388 AC026120.1-201ENST00000611536 926 ntBASIC12.44□□□□□ -0.42
COL7A1Q02388 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC12.44□□□□□ -0.42
COL7A1Q02388 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
COL7A1Q02388 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
COL7A1Q02388 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC12.43□□□□□ -0.42
COL7A1Q02388 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC12.43□□□□□ -0.42
COL7A1Q02388 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC12.43□□□□□ -0.42
COL7A1Q02388 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 LINC00982-205ENST00000420957 435 ntBASIC12.43□□□□□ -0.42
COL7A1Q02388 TSSK5P-201ENST00000423978 907 ntBASIC12.43□□□□□ -0.42
COL7A1Q02388 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC12.43□□□□□ -0.42
COL7A1Q02388 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC12.43□□□□□ -0.42
COL7A1Q02388 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.43□□□□□ -0.42
COL7A1Q02388 AC107918.2-201ENST00000530817 355 ntBASIC12.43□□□□□ -0.42
COL7A1Q02388 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.43□□□□□ -0.42
COL7A1Q02388 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
COL7A1Q02388 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.43□□□□□ -0.42
COL7A1Q02388 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.43□□□□□ -0.42
COL7A1Q02388 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC12.43□□□□□ -0.42
COL7A1Q02388 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms