Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 BCL2-203ENST00000589955 5011 ntBASIC15.08■□□□□ 0.01
ABCA4P78363 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.08■□□□□ 0.01
ABCA4P78363 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
ABCA4P78363 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
ABCA4P78363 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
ABCA4P78363 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC15.08■□□□□ 0.01
ABCA4P78363 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
ABCA4P78363 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
ABCA4P78363 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.08■□□□□ 0
ABCA4P78363 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.08■□□□□ 0
ABCA4P78363 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.08■□□□□ 0
ABCA4P78363 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.08■□□□□ 0
ABCA4P78363 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.08■□□□□ 0
ABCA4P78363 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.08■□□□□ 0
ABCA4P78363 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.08■□□□□ 0
ABCA4P78363 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.08■□□□□ 0
ABCA4P78363 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 AC093503.3-201ENST00000624917 2352 ntBASIC15.08■□□□□ 0
ABCA4P78363 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
ABCA4P78363 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.08■□□□□ 0
ABCA4P78363 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 HLA-J-202ENST00000469281 1241 ntBASIC15.08■□□□□ 0
ABCA4P78363 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.08■□□□□ 0
ABCA4P78363 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
ABCA4P78363 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
ABCA4P78363 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.07■□□□□ 0
ABCA4P78363 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
ABCA4P78363 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.07■□□□□ 0
ABCA4P78363 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
ABCA4P78363 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.07■□□□□ 0
ABCA4P78363 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 TSEN15P1-201ENST00000423257 515 ntBASIC15.07■□□□□ 0
ABCA4P78363 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.07■□□□□ 0
ABCA4P78363 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.07■□□□□ 0
ABCA4P78363 AC109462.3-201ENST00000573934 613 ntBASIC15.07■□□□□ 0
ABCA4P78363 AP002472.1-201ENST00000577490 586 ntBASIC15.07■□□□□ 0
ABCA4P78363 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.07■□□□□ 0
ABCA4P78363 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.07■□□□□ 0
ABCA4P78363 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.07■□□□□ 0
ABCA4P78363 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC15.07■□□□□ 0
ABCA4P78363 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 ELL2P1-201ENST00000413990 1906 ntBASIC15.07■□□□□ 0
ABCA4P78363 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
ABCA4P78363 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC15.07■□□□□ 0
ABCA4P78363 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.07■□□□□ 0
ABCA4P78363 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ABCA4P78363 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
ABCA4P78363 AL020989.1-201ENST00000422979 469 ntBASIC15.06■□□□□ 0
ABCA4P78363 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.06■□□□□ 0
ABCA4P78363 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.06■□□□□ 0
ABCA4P78363 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.06■□□□□ 0
ABCA4P78363 AC064836.3-201ENST00000607928 673 ntBASIC15.06■□□□□ 0
ABCA4P78363 AL805961.1-202ENST00000641562 540 ntBASIC15.06■□□□□ 0
ABCA4P78363 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC15.06■□□□□ 0
ABCA4P78363 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ABCA4P78363 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.06■□□□□ 0
ABCA4P78363 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.06■□□□□ 0
ABCA4P78363 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ABCA4P78363 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
ABCA4P78363 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.06■□□□□ 0
ABCA4P78363 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
ABCA4P78363 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
ABCA4P78363 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms