Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CDH6P55285 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CDH6P55285 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.31■□□□□ 0.52
CDH6P55285 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.31■□□□□ 0.52
CDH6P55285 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.31■□□□□ 0.52
CDH6P55285 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.31■□□□□ 0.52
CDH6P55285 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 LYSMD4-203ENST00000378904 2122 ntBASIC18.31■□□□□ 0.52
CDH6P55285 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.3■□□□□ 0.52
CDH6P55285 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CDH6P55285 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.3■□□□□ 0.52
CDH6P55285 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CDH6P55285 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
CDH6P55285 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.3■□□□□ 0.52
CDH6P55285 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.3■□□□□ 0.52
CDH6P55285 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.3■□□□□ 0.52
CDH6P55285 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.3■□□□□ 0.52
CDH6P55285 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CDH6P55285 AL138831.2-201ENST00000606564 490 ntBASIC18.3■□□□□ 0.52
CDH6P55285 AC091076.1-201ENST00000610741 619 ntBASIC18.3■□□□□ 0.52
CDH6P55285 AL358472.4-201ENST00000633140 710 ntBASIC18.3■□□□□ 0.52
CDH6P55285 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDH6P55285 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.3■□□□□ 0.52
CDH6P55285 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.3■□□□□ 0.52
CDH6P55285 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CDH6P55285 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.3■□□□□ 0.52
CDH6P55285 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CDH6P55285 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CDH6P55285 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH6P55285 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CDH6P55285 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CDH6P55285 TSSC2-201ENST00000450217 709 ntBASIC18.29■□□□□ 0.52
CDH6P55285 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH6P55285 AC091607.1-201ENST00000490318 1060 ntBASIC18.29■□□□□ 0.52
CDH6P55285 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.29■□□□□ 0.52
CDH6P55285 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CDH6P55285 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CDH6P55285 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CDH6P55285 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CDH6P55285 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CDH6P55285 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CDH6P55285 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
CDH6P55285 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH6P55285 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CDH6P55285 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 KRT18P1-202ENST00000452408 1331 ntBASIC18.28■□□□□ 0.52
CDH6P55285 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH6P55285 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH6P55285 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CDH6P55285 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms