Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.92■■□□□ 1.1
COL5A3P25940 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC21.92■■□□□ 1.1
COL5A3P25940 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.91■■□□□ 1.1
COL5A3P25940 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.91■■□□□ 1.1
COL5A3P25940 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.91■■□□□ 1.1
COL5A3P25940 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.91■■□□□ 1.1
COL5A3P25940 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 DUX4L17-201ENST00000557360 1267 ntBASIC21.91■■□□□ 1.1
COL5A3P25940 AL009183.1-201ENST00000603760 355 ntBASIC21.91■■□□□ 1.1
COL5A3P25940 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.91■■□□□ 1.1
COL5A3P25940 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
COL5A3P25940 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A3P25940 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC21.9■■□□□ 1.1
COL5A3P25940 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A3P25940 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.9■■□□□ 1.1
COL5A3P25940 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A3P25940 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL5A3P25940 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.9■■□□□ 1.1
COL5A3P25940 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A3P25940 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.9■■□□□ 1.1
COL5A3P25940 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A3P25940 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
COL5A3P25940 LINC00304-203ENST00000565008 1864 ntBASIC21.9■■□□□ 1.1
COL5A3P25940 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL5A3P25940 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A3P25940 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A3P25940 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL5A3P25940 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC21.9■■□□□ 1.1
COL5A3P25940 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A3P25940 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.9■■□□□ 1.1
COL5A3P25940 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.9■■□□□ 1.1
COL5A3P25940 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC21.89■■□□□ 1.1
COL5A3P25940 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
COL5A3P25940 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
COL5A3P25940 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.89■■□□□ 1.1
COL5A3P25940 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.89■■□□□ 1.1
COL5A3P25940 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.89■■□□□ 1.1
COL5A3P25940 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.89■■□□□ 1.1
COL5A3P25940 AC092474.2-201ENST00000424288 719 ntBASIC21.89■■□□□ 1.1
COL5A3P25940 AL592309.1-201ENST00000443127 649 ntBASIC21.89■■□□□ 1.1
COL5A3P25940 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.89■■□□□ 1.1
COL5A3P25940 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC21.89■■□□□ 1.1
COL5A3P25940 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.89■■□□□ 1.1
COL5A3P25940 AC140878.1-201ENST00000565277 250 ntBASIC21.89■■□□□ 1.1
COL5A3P25940 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL5A3P25940 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL5A3P25940 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.89■■□□□ 1.09
COL5A3P25940 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL5A3P25940 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL5A3P25940 FLJ13224-201ENST00000313737 1514 ntBASIC21.89■■□□□ 1.09
COL5A3P25940 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.89■■□□□ 1.09
COL5A3P25940 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL5A3P25940 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL5A3P25940 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.89■■□□□ 1.09
COL5A3P25940 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
COL5A3P25940 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.89■■□□□ 1.09
COL5A3P25940 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
COL5A3P25940 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC21.89■■□□□ 1.09
COL5A3P25940 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.89■■□□□ 1.09
COL5A3P25940 AL035252.4-201ENST00000624174 288 ntBASIC21.89■■□□□ 1.09
COL5A3P25940 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL5A3P25940 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.88■■□□□ 1.09
COL5A3P25940 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.88■■□□□ 1.09
COL5A3P25940 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.88■■□□□ 1.09
COL5A3P25940 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.88■■□□□ 1.09
COL5A3P25940 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC21.88■■□□□ 1.09
COL5A3P25940 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.88■■□□□ 1.09
COL5A3P25940 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.88■■□□□ 1.09
COL5A3P25940 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A3P25940 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.88■■□□□ 1.09
COL5A3P25940 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.88■■□□□ 1.09
COL5A3P25940 FAM86C2P-203ENST00000528684 1004 ntBASIC21.88■■□□□ 1.09
COL5A3P25940 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.88■■□□□ 1.09
COL5A3P25940 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.88■■□□□ 1.09
COL5A3P25940 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.88■■□□□ 1.09
COL5A3P25940 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.88■■□□□ 1.09
COL5A3P25940 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms