Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RFX1P22670 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.16■□□□□ 0.66
RFX1P22670 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.16■□□□□ 0.66
RFX1P22670 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX1P22670 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX1P22670 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 REXO1L11P-201ENST00000620964 1927 ntBASIC19.16■□□□□ 0.66
RFX1P22670 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 KRT16P4-201ENST00000453883 522 ntBASIC19.16■□□□□ 0.66
RFX1P22670 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.16■□□□□ 0.66
RFX1P22670 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.16■□□□□ 0.66
RFX1P22670 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX1P22670 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.16■□□□□ 0.66
RFX1P22670 AC092865.5-201ENST00000545435 363 ntBASIC19.16■□□□□ 0.66
RFX1P22670 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.16■□□□□ 0.66
RFX1P22670 AC005332.3-201ENST00000589904 676 ntBASIC19.16■□□□□ 0.66
RFX1P22670 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX1P22670 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.16■□□□□ 0.66
RFX1P22670 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RFX1P22670 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RFX1P22670 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RFX1P22670 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RFX1P22670 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RFX1P22670 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX1P22670 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.15■□□□□ 0.66
RFX1P22670 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.15■□□□□ 0.66
RFX1P22670 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.15■□□□□ 0.66
RFX1P22670 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 AC005104.2-201ENST00000427818 678 ntBASIC19.15■□□□□ 0.66
RFX1P22670 MTCL1P1-201ENST00000446207 792 ntBASIC19.15■□□□□ 0.66
RFX1P22670 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.15■□□□□ 0.66
RFX1P22670 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.15■□□□□ 0.66
RFX1P22670 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RFX1P22670 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.15■□□□□ 0.66
RFX1P22670 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
RFX1P22670 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX1P22670 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.15■□□□□ 0.66
RFX1P22670 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.14■□□□□ 0.66
RFX1P22670 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RFX1P22670 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
RFX1P22670 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
RFX1P22670 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.14■□□□□ 0.65
RFX1P22670 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.14■□□□□ 0.65
RFX1P22670 MIR1233-2-201ENST00000408138 82 ntBASIC19.14■□□□□ 0.65
RFX1P22670 MIR1233-1-201ENST00000408722 82 ntBASIC19.14■□□□□ 0.65
RFX1P22670 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RFX1P22670 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.14■□□□□ 0.65
RFX1P22670 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RFX1P22670 AC068472.1-201ENST00000474589 881 ntBASIC19.14■□□□□ 0.65
RFX1P22670 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.14■□□□□ 0.65
RFX1P22670 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 HLA-A-201ENST00000376802 1334 ntBASIC19.14■□□□□ 0.65
RFX1P22670 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RFX1P22670 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.14■□□□□ 0.65
RFX1P22670 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFX1P22670 AL023806.1-201ENST00000603994 1649 ntBASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms