Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.97■□□□□ 0.47
COL9A1P20849 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.97■□□□□ 0.47
COL9A1P20849 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
COL9A1P20849 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.97■□□□□ 0.47
COL9A1P20849 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.97■□□□□ 0.47
COL9A1P20849 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.97■□□□□ 0.47
COL9A1P20849 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.97■□□□□ 0.47
COL9A1P20849 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.97■□□□□ 0.47
COL9A1P20849 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.97■□□□□ 0.47
COL9A1P20849 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL9A1P20849 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.97■□□□□ 0.47
COL9A1P20849 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL9A1P20849 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
COL9A1P20849 PHGDH-209ENST00000641074 1780 ntBASIC17.96■□□□□ 0.47
COL9A1P20849 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
COL9A1P20849 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.96■□□□□ 0.47
COL9A1P20849 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 KRT8P44-201ENST00000441609 1350 ntBASIC17.96■□□□□ 0.47
COL9A1P20849 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL9A1P20849 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC17.96■□□□□ 0.47
COL9A1P20849 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.96■□□□□ 0.47
COL9A1P20849 AC096633.1-201ENST00000422446 749 ntBASIC17.96■□□□□ 0.47
COL9A1P20849 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.96■□□□□ 0.47
COL9A1P20849 AC005237.2-201ENST00000434368 219 ntBASIC17.96■□□□□ 0.47
COL9A1P20849 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.96■□□□□ 0.47
COL9A1P20849 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.96■□□□□ 0.47
COL9A1P20849 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.96■□□□□ 0.47
COL9A1P20849 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
COL9A1P20849 AL162274.1-201ENST00000617191 1098 ntBASIC17.96■□□□□ 0.47
COL9A1P20849 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL9A1P20849 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL9A1P20849 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
COL9A1P20849 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 AC093010.1-201ENST00000473625 1624 ntBASIC17.95■□□□□ 0.46
COL9A1P20849 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.95■□□□□ 0.46
COL9A1P20849 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 TIMM8BP1-201ENST00000452384 211 ntBASIC17.95■□□□□ 0.46
COL9A1P20849 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.95■□□□□ 0.46
COL9A1P20849 IGHV3-65-201ENST00000523210 341 ntBASIC17.95■□□□□ 0.46
COL9A1P20849 AL512356.2-201ENST00000546955 174 ntBASIC17.95■□□□□ 0.46
COL9A1P20849 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
COL9A1P20849 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
COL9A1P20849 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.95■□□□□ 0.46
COL9A1P20849 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.95■□□□□ 0.46
COL9A1P20849 AC009118.2-201ENST00000613275 655 ntBASIC17.95■□□□□ 0.46
COL9A1P20849 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.95■□□□□ 0.46
COL9A1P20849 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 PMPCAP1-201ENST00000508114 1576 ntBASIC17.95■□□□□ 0.46
COL9A1P20849 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.95■□□□□ 0.46
COL9A1P20849 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.95■□□□□ 0.46
COL9A1P20849 SLC25A24-204ENST00000569674 2357 ntBASIC17.95■□□□□ 0.46
COL9A1P20849 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 AC004817.3-201ENST00000602957 2129 ntBASIC17.95■□□□□ 0.46
COL9A1P20849 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL9A1P20849 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
COL9A1P20849 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL9A1P20849 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 AC079776.1-201ENST00000401540 1152 ntBASIC17.94■□□□□ 0.46
COL9A1P20849 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.46
COL9A1P20849 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.94■□□□□ 0.46
COL9A1P20849 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL9A1P20849 AC069335.1-201ENST00000489972 472 ntBASIC17.94■□□□□ 0.46
COL9A1P20849 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.94■□□□□ 0.46
COL9A1P20849 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms