Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.13■□□□□ 0.33
HDAC3O15379 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC3O15379 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.13■□□□□ 0.33
HDAC3O15379 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.13■□□□□ 0.33
HDAC3O15379 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.13■□□□□ 0.33
HDAC3O15379 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.13■□□□□ 0.33
HDAC3O15379 AL139327.4-201ENST00000612362 153 ntBASIC17.13■□□□□ 0.33
HDAC3O15379 AC009154.2-201ENST00000621177 724 ntBASIC17.13■□□□□ 0.33
HDAC3O15379 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC3O15379 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.13■□□□□ 0.33
HDAC3O15379 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC3O15379 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HDAC3O15379 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC3O15379 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC3O15379 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HDAC3O15379 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC3O15379 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.13■□□□□ 0.33
HDAC3O15379 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HDAC3O15379 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
HDAC3O15379 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC3O15379 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.13■□□□□ 0.33
HDAC3O15379 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDAC3O15379 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HDAC3O15379 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
HDAC3O15379 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.12■□□□□ 0.33
HDAC3O15379 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.12■□□□□ 0.33
HDAC3O15379 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.12■□□□□ 0.33
HDAC3O15379 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.12■□□□□ 0.33
HDAC3O15379 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
HDAC3O15379 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.12■□□□□ 0.33
HDAC3O15379 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.12■□□□□ 0.33
HDAC3O15379 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.12■□□□□ 0.33
HDAC3O15379 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
HDAC3O15379 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 LINC02012-201ENST00000608206 1725 ntBASIC17.12■□□□□ 0.33
HDAC3O15379 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HDAC3O15379 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HDAC3O15379 AC046185.3-201ENST00000623228 1824 ntBASIC17.12■□□□□ 0.33
HDAC3O15379 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDAC3O15379 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
HDAC3O15379 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.11■□□□□ 0.33
HDAC3O15379 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.11■□□□□ 0.33
HDAC3O15379 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.11■□□□□ 0.33
HDAC3O15379 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.11■□□□□ 0.33
HDAC3O15379 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
HDAC3O15379 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.11■□□□□ 0.33
HDAC3O15379 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.11■□□□□ 0.33
HDAC3O15379 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.11■□□□□ 0.33
HDAC3O15379 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.11■□□□□ 0.33
HDAC3O15379 AC112698.1-201ENST00000510299 916 ntBASIC17.11■□□□□ 0.33
HDAC3O15379 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.11■□□□□ 0.33
HDAC3O15379 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
HDAC3O15379 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.11■□□□□ 0.33
HDAC3O15379 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.11■□□□□ 0.33
HDAC3O15379 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDAC3O15379 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.11■□□□□ 0.33
HDAC3O15379 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.11■□□□□ 0.33
HDAC3O15379 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HDAC3O15379 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDAC3O15379 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDAC3O15379 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HDAC3O15379 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms