Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC009065.1-201ENST00000564055 1225 ntBASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USH1CQ9Y6N9 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 DGCR10-201ENST00000609839 495 ntBASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
USH1CQ9Y6N9 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 C1QBPP2-201ENST00000528754 825 ntBASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 LINC02199-201ENST00000506655 2702 ntBASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USH1CQ9Y6N9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 AC008741.2-201ENST00000612792 3115 ntBASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 FAM197Y1-201ENST00000421178 764 ntBASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
USH1CQ9Y6N9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms