Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 AC087499.1-201ENST00000418141 1075 ntBASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 AC128688.1-201ENST00000487626 519 ntBASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 AC046185.3-201ENST00000623228 1824 ntBASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCAL1Q9NZC9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 RNF216P1-203ENST00000404404 2427 ntBASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 AC116353.5-201ENST00000638148 1699 ntBASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCAL1Q9NZC9 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms