Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 AC109462.3-201ENST00000573934 613 ntBASIC13.63□□□□□ -0.23
CCDC140Q96MF4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 AC012183.1-201ENST00000625197 499 ntBASIC13.63□□□□□ -0.23
CCDC140Q96MF4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CCDC140Q96MF4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AL139327.4-201ENST00000612362 153 ntBASIC13.62□□□□□ -0.23
CCDC140Q96MF4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AC114341.1-201ENST00000618070 349 ntBASIC13.62□□□□□ -0.23
CCDC140Q96MF4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 AL049757.1-201ENST00000616842 1596 ntBASIC13.62□□□□□ -0.23
CCDC140Q96MF4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CCDC140Q96MF4 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 AC103564.2-201ENST00000432853 1299 ntBASIC13.61□□□□□ -0.23
CCDC140Q96MF4 HCG4P8-203ENST00000443049 980 ntBASIC13.61□□□□□ -0.23
CCDC140Q96MF4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 IGHV3-52-201ENST00000519770 353 ntBASIC13.61□□□□□ -0.23
CCDC140Q96MF4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 AC099336.1-202ENST00000602961 463 ntBASIC13.61□□□□□ -0.23
CCDC140Q96MF4 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC140Q96MF4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms