Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.98■□□□□ 0.63
LRCH3Q96II8 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 PIN1P1-201ENST00000412108 996 ntBASIC18.98■□□□□ 0.63
LRCH3Q96II8 RPS2P32-201ENST00000439199 892 ntBASIC18.98■□□□□ 0.63
LRCH3Q96II8 AC069335.1-201ENST00000489972 472 ntBASIC18.98■□□□□ 0.63
LRCH3Q96II8 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.98■□□□□ 0.63
LRCH3Q96II8 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
LRCH3Q96II8 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.98■□□□□ 0.63
LRCH3Q96II8 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.98■□□□□ 0.63
LRCH3Q96II8 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.98■□□□□ 0.63
LRCH3Q96II8 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 NCF1C-201ENST00000438382 1427 ntBASIC18.98■□□□□ 0.63
LRCH3Q96II8 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LRCH3Q96II8 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 AL512356.2-201ENST00000546955 174 ntBASIC18.97■□□□□ 0.63
LRCH3Q96II8 NIFKP4-201ENST00000567275 1192 ntBASIC18.97■□□□□ 0.63
LRCH3Q96II8 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LRCH3Q96II8 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.97■□□□□ 0.63
LRCH3Q96II8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 KRT8P48-201ENST00000515599 1220 ntBASIC18.96■□□□□ 0.63
LRCH3Q96II8 KRT18P41-201ENST00000518924 1277 ntBASIC18.96■□□□□ 0.63
LRCH3Q96II8 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 AC140878.1-201ENST00000565277 250 ntBASIC18.96■□□□□ 0.63
LRCH3Q96II8 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
LRCH3Q96II8 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.96■□□□□ 0.63
LRCH3Q96II8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
LRCH3Q96II8 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LRCH3Q96II8 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LRCH3Q96II8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LRCH3Q96II8 NEFHP1-201ENST00000412845 2629 ntBASIC18.95■□□□□ 0.62
LRCH3Q96II8 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LRCH3Q96II8 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LRCH3Q96II8 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LRCH3Q96II8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.95■□□□□ 0.62
LRCH3Q96II8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LRCH3Q96II8 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LRCH3Q96II8 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LRCH3Q96II8 AL020989.1-201ENST00000422979 469 ntBASIC18.95■□□□□ 0.62
LRCH3Q96II8 FAM58DP-201ENST00000428076 619 ntBASIC18.95■□□□□ 0.62
LRCH3Q96II8 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.95■□□□□ 0.62
LRCH3Q96II8 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.95■□□□□ 0.62
LRCH3Q96II8 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.95■□□□□ 0.62
LRCH3Q96II8 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms