Protein–RNA interactions for Protein: Q5ST30

VARS2, Valine--tRNA ligase, mitochondrial, humanhuman

Known RBP Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2Q5ST30 MYCLP1-201ENST00000372451 1075 ntBASIC18.6■□□□□ 0.57
VARS2Q5ST30 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VARS2Q5ST30 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.6■□□□□ 0.57
VARS2Q5ST30 PMS2P2-201ENST00000425039 1128 ntBASIC18.6■□□□□ 0.57
VARS2Q5ST30 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VARS2Q5ST30 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VARS2Q5ST30 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VARS2Q5ST30 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.6■□□□□ 0.57
VARS2Q5ST30 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.6■□□□□ 0.57
VARS2Q5ST30 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VARS2Q5ST30 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 RNA5SP416-201ENST00000516838 111 ntBASIC18.59■□□□□ 0.57
VARS2Q5ST30 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VARS2Q5ST30 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.59■□□□□ 0.57
VARS2Q5ST30 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VARS2Q5ST30 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VARS2Q5ST30 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.58■□□□□ 0.57
VARS2Q5ST30 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
VARS2Q5ST30 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.58■□□□□ 0.57
VARS2Q5ST30 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VARS2Q5ST30 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
VARS2Q5ST30 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VARS2Q5ST30 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VARS2Q5ST30 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
VARS2Q5ST30 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
VARS2Q5ST30 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VARS2Q5ST30 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.58■□□□□ 0.57
VARS2Q5ST30 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VARS2Q5ST30 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VARS2Q5ST30 AC017007.3-201ENST00000479865 435 ntBASIC18.58■□□□□ 0.56
VARS2Q5ST30 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 AC097637.2-201ENST00000624096 1997 ntBASIC18.58■□□□□ 0.56
VARS2Q5ST30 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VARS2Q5ST30 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VARS2Q5ST30 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VARS2Q5ST30 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VARS2Q5ST30 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VARS2Q5ST30 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.58■□□□□ 0.56
VARS2Q5ST30 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VARS2Q5ST30 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
VARS2Q5ST30 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
VARS2Q5ST30 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VARS2Q5ST30 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.57■□□□□ 0.56
VARS2Q5ST30 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VARS2Q5ST30 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms