Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.34■□□□□ 0.53
CDH6P55285 AL353801.3-201ENST00000609898 542 ntBASIC18.34■□□□□ 0.53
CDH6P55285 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH6P55285 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 SIRPAP1-201ENST00000448467 1770 ntBASIC18.34■□□□□ 0.53
CDH6P55285 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CDH6P55285 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.34■□□□□ 0.53
CDH6P55285 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH6P55285 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CDH6P55285 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CDH6P55285 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH6P55285 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CDH6P55285 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CDH6P55285 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH6P55285 AC016734.2-201ENST00000624325 1377 ntBASIC18.33■□□□□ 0.53
CDH6P55285 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
CDH6P55285 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.52
CDH6P55285 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CDH6P55285 CHCHD2P8-201ENST00000429873 447 ntBASIC18.33■□□□□ 0.52
CDH6P55285 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.33■□□□□ 0.52
CDH6P55285 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH6P55285 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.33■□□□□ 0.52
CDH6P55285 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.33■□□□□ 0.52
CDH6P55285 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH6P55285 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CDH6P55285 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH6P55285 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH6P55285 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.33■□□□□ 0.52
CDH6P55285 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.33■□□□□ 0.52
CDH6P55285 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.33■□□□□ 0.52
CDH6P55285 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
CDH6P55285 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CDH6P55285 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH6P55285 AC125634.1-201ENST00000438758 1403 ntBASIC18.32■□□□□ 0.52
CDH6P55285 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH6P55285 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH6P55285 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.32■□□□□ 0.52
CDH6P55285 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH6P55285 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH6P55285 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.32■□□□□ 0.52
CDH6P55285 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.32■□□□□ 0.52
CDH6P55285 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.32■□□□□ 0.52
CDH6P55285 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
CDH6P55285 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 COX5BP2-201ENST00000392354 334 ntBASIC18.32■□□□□ 0.52
CDH6P55285 AC007967.3-201ENST00000434308 558 ntBASIC18.32■□□□□ 0.52
CDH6P55285 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH6P55285 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.32■□□□□ 0.52
CDH6P55285 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.32■□□□□ 0.52
CDH6P55285 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.32■□□□□ 0.52
CDH6P55285 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.32■□□□□ 0.52
CDH6P55285 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH6P55285 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.32■□□□□ 0.52
CDH6P55285 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 AC005336.2-201ENST00000593183 939 ntBASIC18.32■□□□□ 0.52
CDH6P55285 AP000550.4-202ENST00000639755 178 ntBASIC18.32■□□□□ 0.52
CDH6P55285 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CDH6P55285 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CDH6P55285 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDH6P55285 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.32■□□□□ 0.52
CDH6P55285 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 AC012313.1-201ENST00000593393 3059 ntBASIC18.31■□□□□ 0.52
CDH6P55285 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.31■□□□□ 0.52
CDH6P55285 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.31■□□□□ 0.52
CDH6P55285 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.31■□□□□ 0.52
CDH6P55285 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDH6P55285 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms