Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.6■□□□□ 0.25
SOX3P41225 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.6■□□□□ 0.25
SOX3P41225 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.6■□□□□ 0.25
SOX3P41225 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.6■□□□□ 0.25
SOX3P41225 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX3P41225 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX3P41225 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
SOX3P41225 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX3P41225 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX3P41225 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 PP12613-201ENST00000424958 2230 ntBASIC16.6■□□□□ 0.25
SOX3P41225 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.59■□□□□ 0.25
SOX3P41225 AC132938.6-201ENST00000623828 1655 ntBASIC16.59■□□□□ 0.25
SOX3P41225 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
SOX3P41225 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 IGHV3-47-201ENST00000425060 335 ntBASIC16.59■□□□□ 0.25
SOX3P41225 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.59■□□□□ 0.25
SOX3P41225 FOSL1P1-201ENST00000511041 816 ntBASIC16.59■□□□□ 0.25
SOX3P41225 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.59■□□□□ 0.25
SOX3P41225 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.59■□□□□ 0.25
SOX3P41225 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 AC099336.1-202ENST00000602961 463 ntBASIC16.59■□□□□ 0.25
SOX3P41225 AC138894.3-201ENST00000603787 634 ntBASIC16.59■□□□□ 0.25
SOX3P41225 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
SOX3P41225 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX3P41225 PKD1P1-201ENST00000458669 6805 ntBASIC16.59■□□□□ 0.25
SOX3P41225 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX3P41225 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX3P41225 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.25
SOX3P41225 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SOX3P41225 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SOX3P41225 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SOX3P41225 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.58■□□□□ 0.25
SOX3P41225 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.58■□□□□ 0.25
SOX3P41225 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
SOX3P41225 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.58■□□□□ 0.24
SOX3P41225 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX3P41225 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
SOX3P41225 MTCL1P1-201ENST00000446207 792 ntBASIC16.58■□□□□ 0.24
SOX3P41225 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.58■□□□□ 0.24
SOX3P41225 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 AL353801.3-201ENST00000609898 542 ntBASIC16.58■□□□□ 0.24
SOX3P41225 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX3P41225 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 NSUN5P1-202ENST00000421140 1535 ntBASIC16.58■□□□□ 0.24
SOX3P41225 NSUN5P2-203ENST00000457352 1529 ntBASIC16.58■□□□□ 0.24
SOX3P41225 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 AC093010.1-201ENST00000473625 1624 ntBASIC16.58■□□□□ 0.24
SOX3P41225 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX3P41225 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
SOX3P41225 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
SOX3P41225 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SOX3P41225 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
SOX3P41225 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.58■□□□□ 0.24
SOX3P41225 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.58■□□□□ 0.24
SOX3P41225 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SOX3P41225 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SOX3P41225 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms