Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 KRT18P48-201ENST00000434763 852 ntBASIC17.74■□□□□ 0.43
CCNFP41002 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.74■□□□□ 0.43
CCNFP41002 ZNF444P1-201ENST00000559497 298 ntBASIC17.74■□□□□ 0.43
CCNFP41002 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.74■□□□□ 0.43
CCNFP41002 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CCNFP41002 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCNFP41002 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CCNFP41002 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCNFP41002 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCNFP41002 KRT8P47-201ENST00000604727 1398 ntBASIC17.74■□□□□ 0.43
CCNFP41002 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
CCNFP41002 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCNFP41002 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCNFP41002 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CCNFP41002 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.73■□□□□ 0.43
CCNFP41002 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 MIR662-201ENST00000384847 95 ntBASIC17.73■□□□□ 0.43
CCNFP41002 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.73■□□□□ 0.43
CCNFP41002 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.73■□□□□ 0.43
CCNFP41002 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
CCNFP41002 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.73■□□□□ 0.43
CCNFP41002 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.73■□□□□ 0.43
CCNFP41002 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.73■□□□□ 0.43
CCNFP41002 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.73■□□□□ 0.43
CCNFP41002 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.73■□□□□ 0.43
CCNFP41002 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CCNFP41002 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CCNFP41002 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCNFP41002 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.73■□□□□ 0.43
CCNFP41002 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CCNFP41002 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.72■□□□□ 0.43
CCNFP41002 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.72■□□□□ 0.43
CCNFP41002 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CCNFP41002 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.72■□□□□ 0.43
CCNFP41002 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.72■□□□□ 0.43
CCNFP41002 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.72■□□□□ 0.43
CCNFP41002 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.72■□□□□ 0.43
CCNFP41002 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.72■□□□□ 0.43
CCNFP41002 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.72■□□□□ 0.43
CCNFP41002 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.72■□□□□ 0.43
CCNFP41002 NTF6B-201ENST00000591913 560 ntBASIC17.72■□□□□ 0.43
CCNFP41002 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
CCNFP41002 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CCNFP41002 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCNFP41002 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.71■□□□□ 0.43
CCNFP41002 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.71■□□□□ 0.43
CCNFP41002 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.71■□□□□ 0.43
CCNFP41002 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CCNFP41002 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.71■□□□□ 0.43
CCNFP41002 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.71■□□□□ 0.43
CCNFP41002 AC083849.1-201ENST00000615227 514 ntBASIC17.71■□□□□ 0.43
CCNFP41002 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.71■□□□□ 0.43
CCNFP41002 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.71■□□□□ 0.43
CCNFP41002 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCNFP41002 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms