Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.81■□□□□ 0.76
CIITAP33076 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CIITAP33076 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.81■□□□□ 0.76
CIITAP33076 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.81■□□□□ 0.76
CIITAP33076 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.81■□□□□ 0.76
CIITAP33076 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CIITAP33076 AC020763.4-201ENST00000623414 4170 ntBASIC19.8■□□□□ 0.76
CIITAP33076 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.8■□□□□ 0.76
CIITAP33076 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.8■□□□□ 0.76
CIITAP33076 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.8■□□□□ 0.76
CIITAP33076 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.8■□□□□ 0.76
CIITAP33076 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.8■□□□□ 0.76
CIITAP33076 AL773604.1-201ENST00000617417 272 ntBASIC19.8■□□□□ 0.76
CIITAP33076 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.8■□□□□ 0.76
CIITAP33076 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CIITAP33076 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.8■□□□□ 0.76
CIITAP33076 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.8■□□□□ 0.76
CIITAP33076 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CIITAP33076 HCG11-201ENST00000411553 5696 ntBASIC19.8■□□□□ 0.76
CIITAP33076 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CIITAP33076 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.79■□□□□ 0.76
CIITAP33076 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CIITAP33076 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.79■□□□□ 0.76
CIITAP33076 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.79■□□□□ 0.76
CIITAP33076 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.79■□□□□ 0.76
CIITAP33076 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.79■□□□□ 0.76
CIITAP33076 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.79■□□□□ 0.76
CIITAP33076 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
CIITAP33076 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CIITAP33076 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.79■□□□□ 0.76
CIITAP33076 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.79■□□□□ 0.76
CIITAP33076 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 LYSMD4-203ENST00000378904 2122 ntBASIC19.79■□□□□ 0.76
CIITAP33076 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.79■□□□□ 0.76
CIITAP33076 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CIITAP33076 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 HLA-A-201ENST00000376802 1334 ntBASIC19.78■□□□□ 0.76
CIITAP33076 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.78■□□□□ 0.76
CIITAP33076 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
CIITAP33076 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CIITAP33076 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.78■□□□□ 0.76
CIITAP33076 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CIITAP33076 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.78■□□□□ 0.76
CIITAP33076 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.78■□□□□ 0.76
CIITAP33076 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 AC107918.4-202ENST00000641623 219 ntBASIC19.78■□□□□ 0.76
CIITAP33076 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CIITAP33076 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CIITAP33076 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CIITAP33076 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.78■□□□□ 0.76
CIITAP33076 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
CIITAP33076 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CIITAP33076 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.77■□□□□ 0.76
CIITAP33076 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CIITAP33076 AL133373.2-201ENST00000623187 2828 ntBASIC19.77■□□□□ 0.76
CIITAP33076 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CIITAP33076 AC046185.3-201ENST00000623228 1824 ntBASIC19.77■□□□□ 0.76
CIITAP33076 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms