Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD3P31249 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD3P31249 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD3P31249 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HOXD3P31249 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXD3P31249 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXD3P31249 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
HOXD3P31249 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 KRT18P55-202ENST00000578578 1546 ntBASIC13.64□□□□□ -0.23
HOXD3P31249 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
HOXD3P31249 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.64□□□□□ -0.23
HOXD3P31249 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC13.64□□□□□ -0.23
HOXD3P31249 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
HOXD3P31249 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 AC007967.3-201ENST00000434308 558 ntBASIC13.64□□□□□ -0.23
HOXD3P31249 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.64□□□□□ -0.23
HOXD3P31249 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC13.64□□□□□ -0.23
HOXD3P31249 AC011467.2-201ENST00000598425 242 ntBASIC13.64□□□□□ -0.23
HOXD3P31249 MIR7706-201ENST00000613747 67 ntBASIC13.64□□□□□ -0.23
HOXD3P31249 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.64□□□□□ -0.23
HOXD3P31249 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 PXK-206ENST00000463280 2825 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HOXD3P31249 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.64□□□□□ -0.23
HOXD3P31249 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HOXD3P31249 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
HOXD3P31249 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC13.63□□□□□ -0.23
HOXD3P31249 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 AL390961.4-201ENST00000623958 2535 ntBASIC13.63□□□□□ -0.23
HOXD3P31249 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXD3P31249 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXD3P31249 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
HOXD3P31249 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD3P31249 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 MED16-201ENST00000269814 1199 ntTSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 FAM220CP-201ENST00000395253 831 ntBASIC13.63□□□□□ -0.23
HOXD3P31249 MIR1233-2-201ENST00000408138 82 ntBASIC13.63□□□□□ -0.23
HOXD3P31249 MIR1233-1-201ENST00000408722 82 ntBASIC13.63□□□□□ -0.23
HOXD3P31249 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXD3P31249 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
HOXD3P31249 RPL13AP23-201ENST00000480739 586 ntBASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms