Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 COPE-203ENST00000351079 907 ntTSL 2 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 TSPY5P-201ENST00000426936 936 ntBASIC13.46□□□□□ -0.25
HLA-DMBP28068 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 TPM1-226ENST00000560959 925 ntTSL 2 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC13.46□□□□□ -0.25
HLA-DMBP28068 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DMBP28068 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DMBP28068 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HLA-DMBP28068 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DMBP28068 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HLA-DMBP28068 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC13.46□□□□□ -0.26
HLA-DMBP28068 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HLA-DMBP28068 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DMBP28068 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DMBP28068 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DMBP28068 HLA-J-201ENST00000462773 1622 ntBASIC13.46□□□□□ -0.26
HLA-DMBP28068 OR6D1P-203ENST00000641209 4860 ntBASIC13.46□□□□□ -0.26
HLA-DMBP28068 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DMBP28068 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
HLA-DMBP28068 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 AC084018.2-201ENST00000613093 2607 ntBASIC13.45□□□□□ -0.26
HLA-DMBP28068 AL391807.1-203ENST00000604392 2365 ntBASIC13.45□□□□□ -0.26
HLA-DMBP28068 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 RASA4DP-201ENST00000460726 1199 ntBASIC13.45□□□□□ -0.26
HLA-DMBP28068 AC034232.1-201ENST00000506026 1064 ntBASIC13.45□□□□□ -0.26
HLA-DMBP28068 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 AL441883.1-201ENST00000566170 1045 ntBASIC13.45□□□□□ -0.26
HLA-DMBP28068 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 AL136038.4-201ENST00000603606 1261 ntBASIC13.45□□□□□ -0.26
HLA-DMBP28068 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 AC004263.2-201ENST00000617183 678 ntBASIC13.45□□□□□ -0.26
HLA-DMBP28068 AC011558.1-201ENST00000623459 338 ntBASIC13.45□□□□□ -0.26
HLA-DMBP28068 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
HLA-DMBP28068 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DMBP28068 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 SPDYE15P-201ENST00000424157 909 ntBASIC13.44□□□□□ -0.26
HLA-DMBP28068 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 AC113404.2-201ENST00000507884 177 ntBASIC13.44□□□□□ -0.26
HLA-DMBP28068 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 AC116407.2-201ENST00000613639 860 ntBASIC13.44□□□□□ -0.26
HLA-DMBP28068 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms