Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TMX2-CTNND1H3BSU7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 AL645608.8-201ENST00000606034 2086 ntBASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 ZNF259P1-201ENST00000407656 1365 ntBASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC046158.3-201ENST00000624947 2558 ntBASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 MTCL1P1-201ENST00000446207 792 ntBASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC141586.5-201ENST00000624546 2050 ntBASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TMX2-CTNND1H3BSU7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC018712.1-201ENST00000455767 687 ntBASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC106730.1-201ENST00000566722 1090 ntBASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 AL671883.3-201ENST00000603274 991 ntBASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TMX2-CTNND1H3BSU7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 KRT18P65-201ENST00000439811 1286 ntBASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 FGFR3P6-201ENST00000457012 610 ntBASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.3■□□□□ 0.36
TMX2-CTNND1H3BSU7 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms