Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
SHROOM4Q9ULL8 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 AC004835.2-201ENST00000603762 682 ntBASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 AC006504.4-201ENST00000592118 1568 ntBASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC33.29■■■□□ 2.92
SHROOM4Q9ULL8 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 AC005034.1-201ENST00000426657 489 ntBASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 RHOQP3-201ENST00000437982 621 ntBASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 TMED1-207ENST00000591695 809 ntTSL 5 BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 YTHDF3-AS1-201ENST00000603538 718 ntBASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 AC019129.2-201ENST00000609837 1235 ntBASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC33.28■■■□□ 2.92
SHROOM4Q9ULL8 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 FAM58CP-201ENST00000435741 640 ntBASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 RPS15P9-201ENST00000494093 319 ntBASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 INO80C-206ENST00000586489 594 ntTSL 3 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 AL390955.2-201ENST00000603032 514 ntBASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 AC091812.2-201ENST00000619081 385 ntBASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 AL049757.1-201ENST00000616842 1596 ntBASIC33.27■■■□□ 2.92
SHROOM4Q9ULL8 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 AL353135.1-201ENST00000606729 504 ntBASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 AC009093.7-201ENST00000623853 1223 ntBASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC33.26■■■□□ 2.92
SHROOM4Q9ULL8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC33.26■■■□□ 2.91
SHROOM4Q9ULL8 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC33.26■■■□□ 2.91
SHROOM4Q9ULL8 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC33.26■■■□□ 2.91
SHROOM4Q9ULL8 PXK-206ENST00000463280 2825 ntTSL 2 BASIC33.26■■■□□ 2.91
SHROOM4Q9ULL8 PC-214ENST00000628663 1470 ntTSL 5 BASIC33.26■■■□□ 2.91
SHROOM4Q9ULL8 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
SHROOM4Q9ULL8 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC33.26■■■□□ 2.91
SHROOM4Q9ULL8 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 COX5BP2-201ENST00000392354 334 ntBASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 CYB561-217ENST00000582997 877 ntTSL 5 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms