Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC012640.2-201ENST00000561606 901 ntBASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 AC109462.3-201ENST00000573934 613 ntBASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLCF1Q9UBD9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 AC003669.1-201ENST00000334569 611 ntBASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 AC002558.1-201ENST00000488906 803 ntBASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 HLA-DQB1-201ENST00000374943 1656 ntBASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 BCL2-203ENST00000589955 5011 ntBASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CLCF1Q9UBD9 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 STK25P1-201ENST00000585406 838 ntBASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 AL671883.3-201ENST00000603274 991 ntBASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 AF228730.7-201ENST00000641842 219 ntBASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 AC004817.3-201ENST00000602957 2129 ntBASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLCF1Q9UBD9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.64■□□□□ 0.1
CLCF1Q9UBD9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CLCF1Q9UBD9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms