Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 KRT18P27-201ENST00000427733 1299 ntBASIC18.23■□□□□ 0.51
HPS4Q9NQG7 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 AC009947.1-201ENST00000444350 727 ntBASIC18.23■□□□□ 0.51
HPS4Q9NQG7 DUTP2-201ENST00000519164 463 ntBASIC18.23■□□□□ 0.51
HPS4Q9NQG7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.23■□□□□ 0.51
HPS4Q9NQG7 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 AC055717.3-201ENST00000622967 595 ntBASIC18.23■□□□□ 0.51
HPS4Q9NQG7 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
HPS4Q9NQG7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 AC073592.3-201ENST00000625118 1834 ntBASIC18.22■□□□□ 0.51
HPS4Q9NQG7 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 SPDYE21P-201ENST00000413323 827 ntBASIC18.22■□□□□ 0.51
HPS4Q9NQG7 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 AL139424.1-201ENST00000607572 797 ntBASIC18.22■□□□□ 0.51
HPS4Q9NQG7 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 SIGLEC16-201ENST00000599858 1437 ntBASIC18.22■□□□□ 0.51
HPS4Q9NQG7 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HPS4Q9NQG7 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AC009113.1-201ENST00000570267 2443 ntBASIC18.21■□□□□ 0.51
HPS4Q9NQG7 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AC007967.2-201ENST00000432613 625 ntBASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 PRYP5-201ENST00000451909 266 ntBASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HPS4Q9NQG7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms