Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 AC005104.2-201ENST00000427818 678 ntBASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 LAGE3P1-201ENST00000425356 484 ntBASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 KRT18P3-201ENST00000451602 1288 ntBASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 BX005266.1-201ENST00000473402 457 ntBASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 UNC93B6-202ENST00000528242 690 ntBASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 ESPNP-201ENST00000270691 2015 ntBASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.62■□□□□ 0.41
TM9SF3Q9HD45 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 AC079776.2-201ENST00000641154 1609 ntBASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TM9SF3Q9HD45 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TM9SF3Q9HD45 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.6■□□□□ 0.41
TM9SF3Q9HD45 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.6■□□□□ 0.41
TM9SF3Q9HD45 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TM9SF3Q9HD45 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.6■□□□□ 0.41
TM9SF3Q9HD45 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
TM9SF3Q9HD45 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
TM9SF3Q9HD45 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms