Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 LINC00982-205ENST00000420957 435 ntBASIC19.18■□□□□ 0.66
HIPK3Q9H422 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.18■□□□□ 0.66
HIPK3Q9H422 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.18■□□□□ 0.66
HIPK3Q9H422 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.18■□□□□ 0.66
HIPK3Q9H422 AC025678.2-201ENST00000562061 970 ntBASIC19.18■□□□□ 0.66
HIPK3Q9H422 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.18■□□□□ 0.66
HIPK3Q9H422 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.18■□□□□ 0.66
HIPK3Q9H422 AC105339.1-204ENST00000636249 355 ntBASIC19.18■□□□□ 0.66
HIPK3Q9H422 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HIPK3Q9H422 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
HIPK3Q9H422 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIPK3Q9H422 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIPK3Q9H422 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HIPK3Q9H422 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIPK3Q9H422 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIPK3Q9H422 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HIPK3Q9H422 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.18■□□□□ 0.66
HIPK3Q9H422 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 AC092474.2-201ENST00000424288 719 ntBASIC19.17■□□□□ 0.66
HIPK3Q9H422 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 HLA-J-203ENST00000494367 1087 ntBASIC19.17■□□□□ 0.66
HIPK3Q9H422 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 IGHV3-52-201ENST00000519770 353 ntBASIC19.17■□□□□ 0.66
HIPK3Q9H422 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 AC068137.2-201ENST00000605408 478 ntBASIC19.17■□□□□ 0.66
HIPK3Q9H422 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 AC009336.1-201ENST00000608941 1553 ntBASIC19.17■□□□□ 0.66
HIPK3Q9H422 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HIPK3Q9H422 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIPK3Q9H422 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 LETM1P2-201ENST00000597330 2178 ntBASIC19.16■□□□□ 0.66
HIPK3Q9H422 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 REXO1L3P-201ENST00000622202 1288 ntBASIC19.16■□□□□ 0.66
HIPK3Q9H422 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 PI4KAP1-204ENST00000612579 1703 ntBASIC19.16■□□□□ 0.66
HIPK3Q9H422 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HIPK3Q9H422 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
HIPK3Q9H422 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HIPK3Q9H422 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.15■□□□□ 0.66
HIPK3Q9H422 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.15■□□□□ 0.66
HIPK3Q9H422 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIPK3Q9H422 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.15■□□□□ 0.66
HIPK3Q9H422 CXCL1P1-201ENST00000502804 216 ntBASIC19.15■□□□□ 0.66
HIPK3Q9H422 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HIPK3Q9H422 AC116407.2-201ENST00000613639 860 ntBASIC19.15■□□□□ 0.66
HIPK3Q9H422 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.15■□□□□ 0.66
HIPK3Q9H422 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms