Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.08■□□□□ 0.16
NPAS1Q99742 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 RCN1P2-201ENST00000398357 915 ntBASIC16.08■□□□□ 0.16
NPAS1Q99742 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.08■□□□□ 0.16
NPAS1Q99742 SLC25A6P5-201ENST00000435663 894 ntBASIC16.08■□□□□ 0.16
NPAS1Q99742 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.08■□□□□ 0.16
NPAS1Q99742 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.08■□□□□ 0.16
NPAS1Q99742 VENTXP7-201ENST00000475503 772 ntBASIC16.08■□□□□ 0.16
NPAS1Q99742 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.08■□□□□ 0.16
NPAS1Q99742 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.08■□□□□ 0.16
NPAS1Q99742 AC096582.2-201ENST00000510860 516 ntBASIC16.08■□□□□ 0.16
NPAS1Q99742 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.08■□□□□ 0.16
NPAS1Q99742 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 AL732292.2-201ENST00000609649 430 ntBASIC16.08■□□□□ 0.16
NPAS1Q99742 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.08■□□□□ 0.16
NPAS1Q99742 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.08■□□□□ 0.16
NPAS1Q99742 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.08■□□□□ 0.16
NPAS1Q99742 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
NPAS1Q99742 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 TP73-AS1-210ENST00000637775 1455 ntBASIC16.08■□□□□ 0.16
NPAS1Q99742 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.08■□□□□ 0.16
NPAS1Q99742 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.08■□□□□ 0.16
NPAS1Q99742 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
NPAS1Q99742 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.07■□□□□ 0.16
NPAS1Q99742 AC090340.1-201ENST00000620778 4980 ntBASIC16.07■□□□□ 0.16
NPAS1Q99742 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
NPAS1Q99742 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 AC046158.3-201ENST00000624947 2558 ntBASIC16.07■□□□□ 0.16
NPAS1Q99742 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
NPAS1Q99742 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NPAS1Q99742 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.07■□□□□ 0.16
NPAS1Q99742 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
NPAS1Q99742 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.07■□□□□ 0.16
NPAS1Q99742 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.07■□□□□ 0.16
NPAS1Q99742 NUS1P2-201ENST00000417358 873 ntBASIC16.07■□□□□ 0.16
NPAS1Q99742 DUSP5P1-201ENST00000441325 1139 ntBASIC16.07■□□□□ 0.16
NPAS1Q99742 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.07■□□□□ 0.16
NPAS1Q99742 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.07■□□□□ 0.16
NPAS1Q99742 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.07■□□□□ 0.16
NPAS1Q99742 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
NPAS1Q99742 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.07■□□□□ 0.16
NPAS1Q99742 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.07■□□□□ 0.16
NPAS1Q99742 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.07■□□□□ 0.16
NPAS1Q99742 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.07■□□□□ 0.16
NPAS1Q99742 AL391005.1-201ENST00000623953 2435 ntBASIC16.07■□□□□ 0.16
NPAS1Q99742 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.07■□□□□ 0.16
NPAS1Q99742 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPAS1Q99742 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NPAS1Q99742 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NPAS1Q99742 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.06■□□□□ 0.16
NPAS1Q99742 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.06■□□□□ 0.16
NPAS1Q99742 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.06■□□□□ 0.16
NPAS1Q99742 SIRPAP1-201ENST00000448467 1770 ntBASIC16.06■□□□□ 0.16
NPAS1Q99742 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.06■□□□□ 0.16
NPAS1Q99742 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.06■□□□□ 0.16
NPAS1Q99742 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.06■□□□□ 0.16
NPAS1Q99742 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.06■□□□□ 0.16
NPAS1Q99742 AC097374.2-201ENST00000618617 1306 ntBASIC16.06■□□□□ 0.16
NPAS1Q99742 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.06■□□□□ 0.16
NPAS1Q99742 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
NPAS1Q99742 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.06■□□□□ 0.16
NPAS1Q99742 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPAS1Q99742 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.06■□□□□ 0.16
NPAS1Q99742 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.06■□□□□ 0.16
NPAS1Q99742 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms