Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 AC100803.2-201ENST00000562459 1963 ntBASIC17.64■□□□□ 0.41
HMGB4Q8WW32 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB4Q8WW32 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 AC018445.3-201ENST00000624177 1945 ntBASIC17.63■□□□□ 0.41
HMGB4Q8WW32 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 IGHV3-65-201ENST00000523210 341 ntBASIC17.63■□□□□ 0.41
HMGB4Q8WW32 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 AC019129.2-201ENST00000609837 1235 ntBASIC17.63■□□□□ 0.41
HMGB4Q8WW32 AL513190.1-201ENST00000621254 727 ntBASIC17.63■□□□□ 0.41
HMGB4Q8WW32 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 KRT18P28-201ENST00000453838 1332 ntBASIC17.63■□□□□ 0.41
HMGB4Q8WW32 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB4Q8WW32 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 METTL21AP1-201ENST00000438852 635 ntBASIC17.62■□□□□ 0.41
HMGB4Q8WW32 HCG4B-203ENST00000450128 991 ntBASIC17.62■□□□□ 0.41
HMGB4Q8WW32 STK19B-204ENST00000512515 211 ntBASIC17.62■□□□□ 0.41
HMGB4Q8WW32 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 AL078644.1-201ENST00000609881 752 ntBASIC17.62■□□□□ 0.41
HMGB4Q8WW32 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGB4Q8WW32 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 AC009949.1-201ENST00000623048 1830 ntBASIC17.61■□□□□ 0.41
HMGB4Q8WW32 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB4Q8WW32 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms