Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 AP002414.2-201ENST00000591780 3365 ntBASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 AC027612.3-201ENST00000413684 1047 ntBASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 TPRG1LP1-201ENST00000598702 760 ntBASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.07□□□□□ -0.16
CLRN3Q8NCR9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 NT5C3AP1-201ENST00000394500 1012 ntBASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 SLC7A5P1-201ENST00000568957 537 ntBASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 AP001160.3-201ENST00000601484 763 ntBASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN3Q8NCR9 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 AC026748.1-201ENST00000624349 3251 ntBASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN3Q8NCR9 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms