Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 MCRIP2P1-201ENST00000394346 511 ntBASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 AC105020.6-201ENST00000621523 1217 ntBASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 TNRC18P2-201ENST00000417666 2714 ntBASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC28AQ8IWP9 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 MNT-208ENST00000575394 606 ntTSL 4 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 AC022517.1-201ENST00000592429 346 ntBASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 AL137784.2-201ENST00000607332 1000 ntBASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 AC016405.3-201ENST00000607710 860 ntBASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28AQ8IWP9 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 AC079328.2-201ENST00000561241 3354 ntBASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 AC100803.2-201ENST00000562459 1963 ntBASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms