Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.8■□□□□ 0.6
SOX4Q06945 Z83851.2-201ENST00000609564 659 ntBASIC18.8■□□□□ 0.6
SOX4Q06945 AC023511.2-201ENST00000618803 211 ntBASIC18.8■□□□□ 0.6
SOX4Q06945 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SOX4Q06945 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
SOX4Q06945 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.8■□□□□ 0.6
SOX4Q06945 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SOX4Q06945 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.79■□□□□ 0.6
SOX4Q06945 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SOX4Q06945 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.79■□□□□ 0.6
SOX4Q06945 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.79■□□□□ 0.6
SOX4Q06945 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.79■□□□□ 0.6
SOX4Q06945 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.79■□□□□ 0.6
SOX4Q06945 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.79■□□□□ 0.6
SOX4Q06945 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.79■□□□□ 0.6
SOX4Q06945 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.79■□□□□ 0.6
SOX4Q06945 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.79■□□□□ 0.6
SOX4Q06945 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.79■□□□□ 0.6
SOX4Q06945 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SOX4Q06945 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 ZNF259P1-201ENST00000407656 1365 ntBASIC18.79■□□□□ 0.6
SOX4Q06945 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SOX4Q06945 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.79■□□□□ 0.6
SOX4Q06945 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX4Q06945 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SOX4Q06945 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SOX4Q06945 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SOX4Q06945 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 LINC00304-203ENST00000565008 1864 ntBASIC18.78■□□□□ 0.6
SOX4Q06945 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 NCF1C-201ENST00000438382 1427 ntBASIC18.78■□□□□ 0.6
SOX4Q06945 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SOX4Q06945 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.78■□□□□ 0.6
SOX4Q06945 MIR940-201ENST00000401276 94 ntBASIC18.78■□□□□ 0.6
SOX4Q06945 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.78■□□□□ 0.6
SOX4Q06945 AC009947.1-201ENST00000444350 727 ntBASIC18.78■□□□□ 0.6
SOX4Q06945 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.78■□□□□ 0.6
SOX4Q06945 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.78■□□□□ 0.6
SOX4Q06945 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX4Q06945 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX4Q06945 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SOX4Q06945 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX4Q06945 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX4Q06945 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX4Q06945 AC097637.2-201ENST00000624096 1997 ntBASIC18.77■□□□□ 0.6
SOX4Q06945 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX4Q06945 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.77■□□□□ 0.6
SOX4Q06945 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
SOX4Q06945 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX4Q06945 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX4Q06945 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX4Q06945 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX4Q06945 MYCLP1-201ENST00000372451 1075 ntBASIC18.77■□□□□ 0.6
SOX4Q06945 AC136632.2-201ENST00000512891 861 ntBASIC18.77■□□□□ 0.6
SOX4Q06945 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms