Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.51■□□□□ 0.55
APOEP02649 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.51■□□□□ 0.55
APOEP02649 BNIP3P18-201ENST00000593976 575 ntBASIC18.51■□□□□ 0.55
APOEP02649 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.51■□□□□ 0.55
APOEP02649 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.51■□□□□ 0.55
APOEP02649 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
APOEP02649 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
APOEP02649 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
APOEP02649 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.51■□□□□ 0.55
APOEP02649 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
APOEP02649 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
APOEP02649 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
APOEP02649 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
APOEP02649 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
APOEP02649 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
APOEP02649 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
APOEP02649 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
APOEP02649 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.51■□□□□ 0.55
APOEP02649 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
APOEP02649 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
APOEP02649 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.5■□□□□ 0.55
APOEP02649 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.5■□□□□ 0.55
APOEP02649 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.5■□□□□ 0.55
APOEP02649 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.5■□□□□ 0.55
APOEP02649 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.5■□□□□ 0.55
APOEP02649 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.5■□□□□ 0.55
APOEP02649 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
APOEP02649 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.5■□□□□ 0.55
APOEP02649 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
APOEP02649 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.5■□□□□ 0.55
APOEP02649 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
APOEP02649 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.5■□□□□ 0.55
APOEP02649 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.5■□□□□ 0.55
APOEP02649 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
APOEP02649 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
APOEP02649 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 KRT18P55-202ENST00000578578 1546 ntBASIC18.49■□□□□ 0.55
APOEP02649 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.49■□□□□ 0.55
APOEP02649 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.49■□□□□ 0.55
APOEP02649 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.49■□□□□ 0.55
APOEP02649 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.49■□□□□ 0.55
APOEP02649 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.49■□□□□ 0.55
APOEP02649 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
APOEP02649 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.49■□□□□ 0.55
APOEP02649 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.49■□□□□ 0.55
APOEP02649 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 AC100803.2-201ENST00000562459 1963 ntBASIC18.49■□□□□ 0.55
APOEP02649 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
APOEP02649 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.49■□□□□ 0.55
APOEP02649 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
APOEP02649 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.49■□□□□ 0.55
APOEP02649 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.49■□□□□ 0.55
APOEP02649 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.49■□□□□ 0.55
APOEP02649 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
APOEP02649 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.49■□□□□ 0.55
APOEP02649 AC097374.2-201ENST00000618617 1306 ntBASIC18.49■□□□□ 0.55
APOEP02649 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
APOEP02649 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
APOEP02649 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
APOEP02649 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOEP02649 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms