Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC28.2■■■□□ 2.11
CHD1O14646 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CHD1O14646 SP100-208ENST00000427101 1922 ntTSL 2 BASIC28.2■■■□□ 2.1
CHD1O14646 AC004945.1-201ENST00000416738 983 ntBASIC28.2■■■□□ 2.1
CHD1O14646 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC28.2■■■□□ 2.1
CHD1O14646 AC092658.1-201ENST00000505836 891 ntBASIC28.2■■■□□ 2.1
CHD1O14646 AP000842.3-202ENST00000569238 1080 ntBASIC28.2■■■□□ 2.1
CHD1O14646 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC28.2■■■□□ 2.1
CHD1O14646 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC28.2■■■□□ 2.1
CHD1O14646 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
CHD1O14646 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC28.2■■■□□ 2.1
CHD1O14646 AL138828.2-201ENST00000615812 383 ntBASIC28.2■■■□□ 2.1
CHD1O14646 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CHD1O14646 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC28.2■■■□□ 2.1
CHD1O14646 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CHD1O14646 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
CHD1O14646 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CHD1O14646 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CHD1O14646 REEP4-207ENST00000523293 913 ntTSL 3 BASIC28.19■■■□□ 2.1
CHD1O14646 AC027369.6-201ENST00000525520 931 ntBASIC28.19■■■□□ 2.1
CHD1O14646 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC28.19■■■□□ 2.1
CHD1O14646 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CHD1O14646 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC28.19■■■□□ 2.1
CHD1O14646 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
CHD1O14646 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC28.19■■■□□ 2.1
CHD1O14646 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC28.19■■■□□ 2.1
CHD1O14646 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CHD1O14646 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC28.19■■■□□ 2.1
CHD1O14646 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CHD1O14646 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
CHD1O14646 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 LY6E-204ENST00000519546 971 ntTSL 2 BASIC28.18■■■□□ 2.1
CHD1O14646 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC28.18■■■□□ 2.1
CHD1O14646 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
CHD1O14646 PHGDH-209ENST00000641074 1780 ntBASIC28.18■■■□□ 2.1
CHD1O14646 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC28.18■■■□□ 2.1
CHD1O14646 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC28.18■■■□□ 2.1
CHD1O14646 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC28.18■■■□□ 2.1
CHD1O14646 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC28.18■■■□□ 2.1
CHD1O14646 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
CHD1O14646 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 AC112492.5-201ENST00000421897 457 ntBASIC28.18■■■□□ 2.1
CHD1O14646 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CHD1O14646 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC28.18■■■□□ 2.1
CHD1O14646 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC28.18■■■□□ 2.1
CHD1O14646 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC28.18■■■□□ 2.1
CHD1O14646 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC28.18■■■□□ 2.1
CHD1O14646 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC28.18■■■□□ 2.1
CHD1O14646 SPTSSB-204ENST00000617024 1292 ntBASIC28.18■■■□□ 2.1
CHD1O14646 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CHD1O14646 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC28.17■■■□□ 2.1
CHD1O14646 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CHD1O14646 MIR658-201ENST00000385210 100 ntBASIC28.17■■■□□ 2.1
CHD1O14646 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CHD1O14646 HNRNPA3P1-201ENST00000401429 1139 ntBASIC28.17■■■□□ 2.1
CHD1O14646 HNRNPA3P5-201ENST00000455201 833 ntBASIC28.17■■■□□ 2.1
CHD1O14646 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
CHD1O14646 NAA38-206ENST00000576384 424 ntTSL 2 BASIC28.17■■■□□ 2.1
CHD1O14646 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
CHD1O14646 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CHD1O14646 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
CHD1O14646 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC28.16■■■□□ 2.1
CHD1O14646 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC28.16■■■□□ 2.1
CHD1O14646 DUTP2-201ENST00000519164 463 ntBASIC28.16■■■□□ 2.1
CHD1O14646 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CHD1O14646 USP48-205ENST00000421625 2818 ntTSL 2 BASIC28.16■■■□□ 2.1
CHD1O14646 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CHD1O14646 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
CHD1O14646 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
CHD1O14646 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
CHD1O14646 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC28.15■■■□□ 2.1
CHD1O14646 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC28.15■■■□□ 2.1
CHD1O14646 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC28.15■■■□□ 2.1
CHD1O14646 IGHV3-62-201ENST00000520057 340 ntBASIC28.15■■■□□ 2.1
CHD1O14646 POLE2-203ENST00000553805 496 ntTSL 2 BASIC28.15■■■□□ 2.1
CHD1O14646 AC008738.7-201ENST00000609744 511 ntBASIC28.15■■■□□ 2.1
CHD1O14646 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC28.15■■■□□ 2.1
CHD1O14646 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
CHD1O14646 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CHD1O14646 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC28.15■■■□□ 2.1
CHD1O14646 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CHD1O14646 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CHD1O14646 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
CHD1O14646 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC28.15■■■□□ 2.1
CHD1O14646 INE1-201ENST00000456273 945 ntBASIC28.15■■■□□ 2.1
CHD1O14646 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC28.15■■■□□ 2.1
CHD1O14646 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC28.15■■■□□ 2.1
CHD1O14646 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
CHD1O14646 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CHD1O14646 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC28.14■■■□□ 2.1
CHD1O14646 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms