Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.05■□□□□ 0.48
CBX4O00257 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
CBX4O00257 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.04■□□□□ 0.48
CBX4O00257 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CBX4O00257 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.04■□□□□ 0.48
CBX4O00257 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.04■□□□□ 0.48
CBX4O00257 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CBX4O00257 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.04■□□□□ 0.48
CBX4O00257 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.04■□□□□ 0.48
CBX4O00257 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.04■□□□□ 0.48
CBX4O00257 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 AP001269.4-201ENST00000609611 512 ntBASIC18.04■□□□□ 0.48
CBX4O00257 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.04■□□□□ 0.48
CBX4O00257 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.04■□□□□ 0.48
CBX4O00257 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CBX4O00257 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CBX4O00257 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.04■□□□□ 0.48
CBX4O00257 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CBX4O00257 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CBX4O00257 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.03■□□□□ 0.48
CBX4O00257 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
CBX4O00257 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.03■□□□□ 0.48
CBX4O00257 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.03■□□□□ 0.48
CBX4O00257 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.03■□□□□ 0.48
CBX4O00257 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 ABCD1P5-201ENST00000445663 754 ntBASIC18.03■□□□□ 0.48
CBX4O00257 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 AF238378.1-201ENST00000526806 358 ntBASIC18.03■□□□□ 0.48
CBX4O00257 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.03■□□□□ 0.48
CBX4O00257 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.03■□□□□ 0.48
CBX4O00257 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.03■□□□□ 0.48
CBX4O00257 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.03■□□□□ 0.48
CBX4O00257 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CBX4O00257 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CBX4O00257 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CBX4O00257 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.02■□□□□ 0.48
CBX4O00257 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CBX4O00257 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.02■□□□□ 0.48
CBX4O00257 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.02■□□□□ 0.48
CBX4O00257 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
CBX4O00257 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.02■□□□□ 0.48
CBX4O00257 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CBX4O00257 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CBX4O00257 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.02■□□□□ 0.48
CBX4O00257 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.02■□□□□ 0.48
CBX4O00257 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.02■□□□□ 0.48
CBX4O00257 AC103564.2-201ENST00000432853 1299 ntBASIC18.02■□□□□ 0.48
CBX4O00257 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.02■□□□□ 0.48
CBX4O00257 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.02■□□□□ 0.48
CBX4O00257 PKD1P1-201ENST00000458669 6805 ntBASIC18.02■□□□□ 0.48
CBX4O00257 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.02■□□□□ 0.48
CBX4O00257 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.02■□□□□ 0.48
CBX4O00257 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms