Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
C1QTNF3-AMACRE9PGA6 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 MIR574-201ENST00000385209 96 ntBASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 PGM5P2-202ENST00000637225 1043 ntBASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 BICD1-207ENST00000551848 1962 ntBASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 NCF1C-201ENST00000438382 1427 ntBASIC17.64■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AC145285.3-201ENST00000564603 959 ntBASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AC005593.1-201ENST00000624894 515 ntBASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AC104109.2-201ENST00000602919 1418 ntBASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AP002414.3-201ENST00000589352 1468 ntBASIC17.63■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AC148477.5-201ENST00000625164 1645 ntBASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 AC005104.2-201ENST00000427818 678 ntBASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 RNA5SP415-201ENST00000517246 115 ntBASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
C1QTNF3-AMACRE9PGA6 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms