Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 FAM58CP-201ENST00000435741 640 ntBASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 AC027612.4-201ENST00000605371 583 ntBASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 CITED2-204ENST00000618718 901 ntTSL 2 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
CDK11AQ9UQ88 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CDK11AQ9UQ88 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
CDK11AQ9UQ88 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 PI4KAP1-204ENST00000612579 1703 ntBASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDK11AQ9UQ88 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 STOM-202ENST00000347359 870 ntTSL 2 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 NEK7-201ENST00000367383 586 ntTSL 2 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 DDT-204ENST00000404092 805 ntTSL 3 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 CXCL1P1-201ENST00000502804 216 ntBASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 AC091812.2-201ENST00000619081 385 ntBASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 REM2-202ENST00000536884 1331 ntTSL 2 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CDK11AQ9UQ88 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CDK11AQ9UQ88 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC27.08■■□□□ 1.93
CDK11AQ9UQ88 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
CDK11AQ9UQ88 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC27.08■■□□□ 1.93
CDK11AQ9UQ88 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC27.08■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms