Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 CTNS-203ENST00000399306 803 ntTSL 3 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NOTCH3Q9UM47 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 UPF3AP3-201ENST00000420996 769 ntBASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 FGFR3P6-201ENST00000457012 610 ntBASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 AC068472.1-201ENST00000474589 881 ntBASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 AC098818.2-201ENST00000564925 2320 ntBASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 AL139288.1-201ENST00000623748 933 ntBASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NOTCH3Q9UM47 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
NOTCH3Q9UM47 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 DNAJB3-202ENST00000449667 1266 ntBASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 AC009154.2-201ENST00000621177 724 ntBASIC13.64□□□□□ -0.23
NOTCH3Q9UM47 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms