Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 AC105339.3-201ENST00000560043 636 ntBASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 AC097374.2-201ENST00000618617 1306 ntBASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 AC073592.3-201ENST00000625118 1834 ntBASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 AL591424.1-201ENST00000442569 1213 ntBASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 AC092183.1-201ENST00000469884 875 ntBASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TM9SF3Q9HD45 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TM9SF3Q9HD45 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
TM9SF3Q9HD45 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TM9SF3Q9HD45 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
TM9SF3Q9HD45 AP002414.3-201ENST00000589352 1468 ntBASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.64■□□□□ 0.41
TM9SF3Q9HD45 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TM9SF3Q9HD45 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms