Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.992e-6■■□□□ 12.2
UPF1Q92900 SRP72-201ENST00000342756 3983 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.692e-8■■□□□ 12.2
UPF1Q92900 SRP72-204ENST00000507126 2181 ntTSL 1 (best)7.53□□□□□ -1.22e-8■■□□□ 12.2
UPF1Q92900 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC8.34□□□□□ -1.081e-6■■□□□ 12.2
UPF1Q92900 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.091e-6■■□□□ 12.2
UPF1Q92900 ZNF385A-211ENST00000550779 2099 ntTSL 520.58■□□□□ 0.881e-6■■□□□ 12.2
UPF1Q92900 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.42■□□□□ 0.71e-6■■□□□ 12.2
UPF1Q92900 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.23■□□□□ 0.511e-6■■□□□ 12.2
UPF1Q92900 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.68■□□□□ 0.421e-6■■□□□ 12.2
UPF1Q92900 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.321e-6■■□□□ 12.2
UPF1Q92900 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.34■□□□□ 0.211e-6■■□□□ 12.2
UPF1Q92900 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.184e-7■■□□□ 12.2
UPF1Q92900 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.034e-7■■□□□ 12.2
UPF1Q92900 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.274e-7■■□□□ 12.2
UPF1Q92900 BRD2-207ENST00000463639 946 ntTSL 29.26□□□□□ -0.931e-8■■□□□ 12.2
UPF1Q92900 AGFG2-202ENST00000429987 928 ntTSL 324.53■■□□□ 1.526e-9■■□□□ 12.2
UPF1Q92900 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.084e-7■■□□□ 12.2
UPF1Q92900 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.084e-7■■□□□ 12.2
UPF1Q92900 MLX-206ENST00000588320 2313 ntTSL 516.86■□□□□ 0.294e-7■■□□□ 12.2
UPF1Q92900 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.24e-7■■□□□ 12.2
UPF1Q92900 MLX-207ENST00000590050 2537 ntTSL 215.23■□□□□ 0.034e-7■■□□□ 12.2
UPF1Q92900 MLX-203ENST00000435881 2428 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.114e-7■■□□□ 12.2
UPF1Q92900 TLDC1-201ENST00000343629 5046 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.614e-7■■□□□ 12.2
UPF1Q92900 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC10.6□□□□□ -0.714e-7■■□□□ 12.2
UPF1Q92900 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC10.02□□□□□ -0.814e-7■■□□□ 12.2
UPF1Q92900 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC9.23□□□□□ -0.934e-7■■□□□ 12.2
UPF1Q92900 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC9.06□□□□□ -0.964e-7■■□□□ 12.2
UPF1Q92900 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC8.85□□□□□ -0.994e-7■■□□□ 12.2
UPF1Q92900 MOCS2-204ENST00000502402 2849 ntTSL 25.91□□□□□ -1.464e-7■■□□□ 12.2
UPF1Q92900 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.22e-9■■□□□ 12.2
UPF1Q92900 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC21.33■■□□□ 12e-9■■□□□ 12.2
UPF1Q92900 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.892e-9■■□□□ 12.2
UPF1Q92900 RPS9-206ENST00000436445 752 ntTSL 220.59■□□□□ 0.892e-9■■□□□ 12.2
UPF1Q92900 RPS9-208ENST00000445961 944 ntTSL 520.59■□□□□ 0.892e-9■■□□□ 12.2
UPF1Q92900 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.812e-9■■□□□ 12.2
UPF1Q92900 RPS9-211ENST00000484121 897 ntTSL 219.81■□□□□ 0.762e-9■■□□□ 12.2
UPF1Q92900 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.58■□□□□ 0.722e-9■■□□□ 12.2
UPF1Q92900 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC19.33■□□□□ 0.682e-9■■□□□ 12.2
UPF1Q92900 RPS9-212ENST00000495002 956 ntTSL 1 (best)17.5■□□□□ 0.392e-9■■□□□ 12.2
UPF1Q92900 RPS9-209ENST00000448962 2384 ntTSL 216.13■□□□□ 0.172e-9■■□□□ 12.2
UPF1Q92900 RBSN-201ENST00000253699 6678 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.793e-7■■□□□ 12.2
UPF1Q92900 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.935e-7■■□□□ 12.2
UPF1Q92900 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.952e-9■■□□□ 12.2
UPF1Q92900 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.832e-9■■□□□ 12.2
UPF1Q92900 DHRS2-209ENST00000557535 927 ntTSL 525.12■■□□□ 1.612e-9■■□□□ 12.2
UPF1Q92900 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.272e-9■■□□□ 12.2
UPF1Q92900 DHRS2-208ENST00000556729 5318 ntTSL 216.26■□□□□ 0.192e-9■■□□□ 12.2
UPF1Q92900 DHRS2-207ENST00000556701 3157 ntTSL 1 (best)14.77□□□□□ -0.042e-9■■□□□ 12.2
UPF1Q92900 DHRS2-206ENST00000556550 2595 nt14.27□□□□□ -0.132e-9■■□□□ 12.2
UPF1Q92900 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.042e-10■■□□□ 12.2
UPF1Q92900 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC27.2■■□□□ 1.943e-13■■□□□ 12.2
UPF1Q92900 APOC3-202ENST00000375345 604 ntTSL 5 BASIC22.37■■□□□ 1.173e-13■■□□□ 12.2
UPF1Q92900 APOC3-201ENST00000227667 550 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.383e-13■■□□□ 12.2
UPF1Q92900 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC34.4■■■■□ 3.12e-8■■□□□ 12.2
UPF1Q92900 CENPX-203ENST00000577379 861 ntTSL 531.83■■■□□ 2.692e-8■■□□□ 12.2
UPF1Q92900 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC27.46■■□□□ 1.992e-8■■□□□ 12.2
UPF1Q92900 CENPX-207ENST00000583767 894 ntTSL 327.36■■□□□ 1.972e-8■■□□□ 12.2
UPF1Q92900 CENPX-209ENST00000584514 882 ntTSL 227.13■■□□□ 1.932e-8■■□□□ 12.2
UPF1Q92900 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC26.75■■□□□ 1.872e-8■■□□□ 12.2
UPF1Q92900 CENPX-205ENST00000580090 752 ntTSL 225.8■■□□□ 1.722e-8■■□□□ 12.2
UPF1Q92900 CENPX-210ENST00000584600 730 ntTSL 223.71■■□□□ 1.392e-8■■□□□ 12.2
UPF1Q92900 CENPX-204ENST00000579520 702 ntTSL 323.65■■□□□ 1.382e-8■■□□□ 12.2
UPF1Q92900 CENPX-208ENST00000584347 799 ntTSL 2 BASIC20.85■□□□□ 0.932e-8■■□□□ 12.2
UPF1Q92900 BRF2-201ENST00000220659 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.132e-7■■□□□ 12.1
UPF1Q92900 STARD4-209ENST00000511137 1135 ntTSL 222.93■■□□□ 1.267e-11■■□□□ 12.1
UPF1Q92900 PRELID2-205ENST00000510259 525 ntTSL 311.51□□□□□ -0.573e-7■■□□□ 12.1
UPF1Q92900 PRELID2-206ENST00000510594 552 ntTSL 310.07□□□□□ -0.83e-7■■□□□ 12.1
UPF1Q92900 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.072e-7■■□□□ 12.1
UPF1Q92900 E2F3-203ENST00000613242 4094 ntTSL 5 BASIC11.6□□□□□ -0.552e-7■■□□□ 12.1
UPF1Q92900 E2F3-202ENST00000535432 4425 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.822e-7■■□□□ 12.1
UPF1Q92900 CHP1-201ENST00000334660 3329 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.569e-8■■□□□ 12.1
UPF1Q92900 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.319e-15■■□□□ 12.1
UPF1Q92900 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.299e-15■■□□□ 12.1
UPF1Q92900 UBE2D3-209ENST00000394804 4166 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.389e-15■■□□□ 12.1
UPF1Q92900 UBE2D3-208ENST00000394803 2227 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.749e-15■■□□□ 12.1
UPF1Q92900 UBE2D3-203ENST00000343106 2389 ntAPPRIS P4 TSL 2 BASIC9.76□□□□□ -0.859e-15■■□□□ 12.1
UPF1Q92900 UBE2D3-224ENST00000508474 4819 ntTSL 26.97□□□□□ -1.299e-15■■□□□ 12.1
UPF1Q92900 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.59e-15■■□□□ 12.1
UPF1Q92900 NEU3-203ENST00000529024 581 ntTSL 3 BASIC22.36■■□□□ 1.174e-7■■□□□ 12.1
UPF1Q92900 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.334e-7■■□□□ 12.1
UPF1Q92900 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.092e-6■■□□□ 12.1
UPF1Q92900 MPZL1-205ENST00000448405 1596 ntTSL 1 (best)30.15■■■□□ 2.423e-10■■□□□ 12.1
UPF1Q92900 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.71■□□□□ 0.113e-7■■□□□ 12.1
UPF1Q92900 AGK-201ENST00000355413 3849 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.613e-7■■□□□ 12.1
UPF1Q92900 LUC7L2-204ENST00000456182 2411 ntTSL 1 (best)20.86■□□□□ 0.934e-11■■□□□ 12.1
UPF1Q92900 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.714e-11■■□□□ 12.1
UPF1Q92900 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.16■□□□□ 0.54e-11■■□□□ 12.1
UPF1Q92900 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC9.86□□□□□ -0.834e-11■■□□□ 12.1
UPF1Q92900 LUC7L2-206ENST00000482860 2599 ntTSL 28.88□□□□□ -0.994e-11■■□□□ 12.1
UPF1Q92900 LUC7L2-207ENST00000498518 2837 ntTSL 25.64□□□□□ -1.514e-11■■□□□ 12.1
UPF1Q92900 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.84■□□□□ 0.771e-6■■□□□ 12.1
UPF1Q92900 ZNF74-207ENST00000476678 3879 ntTSL 214.38□□□□□ -0.111e-6■■□□□ 12.1
UPF1Q92900 VAMP7-201ENST00000262640 2496 ntTSL 1 (best) BASIC15.58■□□□□ 0.094e-12■■□□□ 12.1
UPF1Q92900 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.314e-12■■□□□ 12.1
UPF1Q92900 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.582e-6■■□□□ 12.1
UPF1Q92900 EEF2-207ENST00000600794 352 ntTSL 313.5□□□□□ -0.251e-9■■□□□ 12.1
UPF1Q92900 EEF2-201ENST00000309311 3164 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.381e-9■■□□□ 12.1
UPF1Q92900 UCP2-209ENST00000545212 389 ntTSL 313.19□□□□□ -0.31e-17■■□□□ 12
UPF1Q92900 MAZ-211ENST00000567444 635 ntTSL 234.37■■■■□ 3.094e-13■■□□□ 12
UPF1Q92900 SFXN5-221ENST00000495208 808 ntTSL 1 (best)24.88■■□□□ 1.572e-7■■□□□ 12
Retrieved 100 of 15,879 protein–RNA pairs in 94.6 ms