Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 IDNK-201ENST00000376417 511 ntTSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
LINC00643Q86TS7 AC087633.2-202ENST00000565166 1439 ntBASIC11.01□□□□□ -0.65
LINC00643Q86TS7 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 AC018553.1-201ENST00000616682 1458 ntBASIC11□□□□□ -0.65
LINC00643Q86TS7 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC11□□□□□ -0.65
LINC00643Q86TS7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC11□□□□□ -0.65
LINC00643Q86TS7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC11□□□□□ -0.65
LINC00643Q86TS7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
LINC00643Q86TS7 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC11□□□□□ -0.65
LINC00643Q86TS7 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
LINC00643Q86TS7 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC11□□□□□ -0.65
LINC00643Q86TS7 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11□□□□□ -0.65
LINC00643Q86TS7 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
LINC00643Q86TS7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC11□□□□□ -0.65
LINC00643Q86TS7 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC11□□□□□ -0.65
LINC00643Q86TS7 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC11□□□□□ -0.65
LINC00643Q86TS7 ADAMTS7P1-201ENST00000613213 4793 ntBASIC11□□□□□ -0.65
LINC00643Q86TS7 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
LINC00643Q86TS7 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 GPAT2P1-201ENST00000444924 1672 ntBASIC10.99□□□□□ -0.65
LINC00643Q86TS7 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 SAPCD2P1-201ENST00000395413 1184 ntBASIC10.99□□□□□ -0.65
LINC00643Q86TS7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 AC137630.3-201ENST00000607245 391 ntBASIC10.99□□□□□ -0.65
LINC00643Q86TS7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 AC073347.1-201ENST00000421633 2643 ntBASIC10.99□□□□□ -0.65
LINC00643Q86TS7 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC10.99□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms