Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
EPHB3P54753 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.41■□□□□ 0.54
EPHB3P54753 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.41■□□□□ 0.54
EPHB3P54753 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.41■□□□□ 0.54
EPHB3P54753 AC040169.1-201ENST00000565382 521 ntBASIC18.41■□□□□ 0.54
EPHB3P54753 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.41■□□□□ 0.54
EPHB3P54753 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.41■□□□□ 0.54
EPHB3P54753 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
EPHB3P54753 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
EPHB3P54753 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.41■□□□□ 0.54
EPHB3P54753 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
EPHB3P54753 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
EPHB3P54753 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
EPHB3P54753 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.4■□□□□ 0.54
EPHB3P54753 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
EPHB3P54753 KRT18P55-202ENST00000578578 1546 ntBASIC18.4■□□□□ 0.54
EPHB3P54753 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
EPHB3P54753 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.4■□□□□ 0.54
EPHB3P54753 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 MYCLP1-201ENST00000372451 1075 ntBASIC18.4■□□□□ 0.54
EPHB3P54753 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.4■□□□□ 0.54
EPHB3P54753 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 AC002558.1-201ENST00000488906 803 ntBASIC18.4■□□□□ 0.54
EPHB3P54753 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.4■□□□□ 0.54
EPHB3P54753 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.4■□□□□ 0.54
EPHB3P54753 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.4■□□□□ 0.54
EPHB3P54753 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.4■□□□□ 0.54
EPHB3P54753 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.4■□□□□ 0.54
EPHB3P54753 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.4■□□□□ 0.54
EPHB3P54753 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.4■□□□□ 0.54
EPHB3P54753 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.4■□□□□ 0.54
EPHB3P54753 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.4■□□□□ 0.54
EPHB3P54753 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
EPHB3P54753 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.39■□□□□ 0.54
EPHB3P54753 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
EPHB3P54753 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
EPHB3P54753 AC006504.4-201ENST00000592118 1568 ntBASIC18.39■□□□□ 0.53
EPHB3P54753 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
EPHB3P54753 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
EPHB3P54753 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.39■□□□□ 0.53
EPHB3P54753 ELK2BP-201ENST00000415014 1224 ntBASIC18.39■□□□□ 0.53
EPHB3P54753 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.39■□□□□ 0.53
EPHB3P54753 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.39■□□□□ 0.53
EPHB3P54753 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.39■□□□□ 0.53
EPHB3P54753 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.39■□□□□ 0.53
EPHB3P54753 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.39■□□□□ 0.53
EPHB3P54753 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.39■□□□□ 0.53
EPHB3P54753 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 AC087289.5-201ENST00000586076 3175 ntBASIC18.39■□□□□ 0.53
EPHB3P54753 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
EPHB3P54753 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 AC004408.2-201ENST00000623613 2777 ntBASIC18.39■□□□□ 0.53
EPHB3P54753 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
EPHB3P54753 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
EPHB3P54753 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
EPHB3P54753 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
EPHB3P54753 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
EPHB3P54753 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms