Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC24.28■■□□□ 1.48
MSH6P52701 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 IGHV3-42-201ENST00000520410 361 ntBASIC24.28■■□□□ 1.48
MSH6P52701 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC24.28■■□□□ 1.48
MSH6P52701 RPL28-209ENST00000560055 670 ntTSL 3 BASIC24.28■■□□□ 1.48
MSH6P52701 TMED1-207ENST00000591695 809 ntTSL 5 BASIC24.28■■□□□ 1.48
MSH6P52701 AC027307.3-201ENST00000594262 1100 ntBASIC24.28■■□□□ 1.48
MSH6P52701 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC24.28■■□□□ 1.48
MSH6P52701 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC24.27■■□□□ 1.48
MSH6P52701 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH6P52701 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH6P52701 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH6P52701 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH6P52701 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH6P52701 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH6P52701 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
MSH6P52701 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH6P52701 AC022494.1-201ENST00000466044 728 ntBASIC24.27■■□□□ 1.48
MSH6P52701 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC24.27■■□□□ 1.48
MSH6P52701 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC24.27■■□□□ 1.48
MSH6P52701 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
MSH6P52701 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH6P52701 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH6P52701 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC24.27■■□□□ 1.48
MSH6P52701 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC24.27■■□□□ 1.47
MSH6P52701 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH6P52701 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC24.26■■□□□ 1.47
MSH6P52701 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
MSH6P52701 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC24.26■■□□□ 1.47
MSH6P52701 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
MSH6P52701 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
MSH6P52701 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH6P52701 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH6P52701 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
MSH6P52701 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC24.25■■□□□ 1.47
MSH6P52701 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH6P52701 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC24.25■■□□□ 1.47
MSH6P52701 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC24.25■■□□□ 1.47
MSH6P52701 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC24.25■■□□□ 1.47
MSH6P52701 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH6P52701 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH6P52701 AC093010.1-201ENST00000473625 1624 ntBASIC24.25■■□□□ 1.47
MSH6P52701 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH6P52701 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
MSH6P52701 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC24.25■■□□□ 1.47
MSH6P52701 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC24.25■■□□□ 1.47
MSH6P52701 NAA50-208ENST00000497255 789 ntTSL 5 BASIC24.25■■□□□ 1.47
MSH6P52701 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC24.25■■□□□ 1.47
MSH6P52701 AL158211.3-201ENST00000607385 239 ntBASIC24.25■■□□□ 1.47
MSH6P52701 AC025048.6-201ENST00000634326 1161 ntBASIC24.25■■□□□ 1.47
MSH6P52701 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH6P52701 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH6P52701 ESPNP-201ENST00000270691 2015 ntBASIC24.25■■□□□ 1.47
MSH6P52701 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
MSH6P52701 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
MSH6P52701 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC24.24■■□□□ 1.47
MSH6P52701 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC24.24■■□□□ 1.47
MSH6P52701 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
MSH6P52701 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC24.24■■□□□ 1.47
MSH6P52701 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC24.24■■□□□ 1.47
MSH6P52701 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
MSH6P52701 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC24.24■■□□□ 1.47
MSH6P52701 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
MSH6P52701 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH6P52701 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.24■■□□□ 1.47
MSH6P52701 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH6P52701 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
MSH6P52701 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH6P52701 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH6P52701 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH6P52701 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH6P52701 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH6P52701 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH6P52701 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH6P52701 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms