Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TNFSF9P41273 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.1■□□□□ 0.65
TNFSF9P41273 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
TNFSF9P41273 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFSF9P41273 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.09■□□□□ 0.65
TNFSF9P41273 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFSF9P41273 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.09■□□□□ 0.65
TNFSF9P41273 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFSF9P41273 BX005266.1-201ENST00000473402 457 ntBASIC19.09■□□□□ 0.65
TNFSF9P41273 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFSF9P41273 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFSF9P41273 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
TNFSF9P41273 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.09■□□□□ 0.65
TNFSF9P41273 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.09■□□□□ 0.65
TNFSF9P41273 NKAPP1-205ENST00000585790 367 ntBASIC19.09■□□□□ 0.65
TNFSF9P41273 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.09■□□□□ 0.65
TNFSF9P41273 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TNFSF9P41273 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.09■□□□□ 0.65
TNFSF9P41273 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFSF9P41273 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TNFSF9P41273 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.09■□□□□ 0.65
TNFSF9P41273 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TNFSF9P41273 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TNFSF9P41273 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFSF9P41273 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFSF9P41273 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFSF9P41273 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFSF9P41273 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TNFSF9P41273 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.65
TNFSF9P41273 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.08■□□□□ 0.65
TNFSF9P41273 AL356309.3-201ENST00000624132 1934 ntBASIC19.08■□□□□ 0.65
TNFSF9P41273 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.08■□□□□ 0.65
TNFSF9P41273 AC079776.2-201ENST00000641154 1609 ntBASIC19.08■□□□□ 0.65
TNFSF9P41273 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TNFSF9P41273 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.65
TNFSF9P41273 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.08■□□□□ 0.65
TNFSF9P41273 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TNFSF9P41273 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TNFSF9P41273 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.08■□□□□ 0.64
TNFSF9P41273 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TNFSF9P41273 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TNFSF9P41273 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
TNFSF9P41273 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
TNFSF9P41273 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
TNFSF9P41273 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.08■□□□□ 0.64
TNFSF9P41273 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.08■□□□□ 0.64
TNFSF9P41273 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TNFSF9P41273 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TNFSF9P41273 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TNFSF9P41273 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TNFSF9P41273 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.07■□□□□ 0.64
TNFSF9P41273 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 SPDYE21P-201ENST00000413323 827 ntBASIC19.07■□□□□ 0.64
TNFSF9P41273 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.07■□□□□ 0.64
TNFSF9P41273 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.07■□□□□ 0.64
TNFSF9P41273 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
TNFSF9P41273 AC002558.1-201ENST00000488906 803 ntBASIC19.07■□□□□ 0.64
TNFSF9P41273 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.07■□□□□ 0.64
TNFSF9P41273 AC021087.4-201ENST00000563761 564 ntBASIC19.07■□□□□ 0.64
TNFSF9P41273 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.07■□□□□ 0.64
TNFSF9P41273 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.07■□□□□ 0.64
TNFSF9P41273 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
TNFSF9P41273 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TNFSF9P41273 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TNFSF9P41273 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms