Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CUX1P39880 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC29.29■■■□□ 2.28
CUX1P39880 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CUX1P39880 COPE-202ENST00000349893 948 ntTSL 2 BASIC29.29■■■□□ 2.28
CUX1P39880 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CUX1P39880 VPS29-207ENST00000549970 818 ntTSL 3 BASIC29.29■■■□□ 2.28
CUX1P39880 THTPA-204ENST00000554970 569 ntTSL 4 BASIC29.29■■■□□ 2.28
CUX1P39880 THTPA-206ENST00000556015 535 ntTSL 3 BASIC29.29■■■□□ 2.28
CUX1P39880 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC29.29■■■□□ 2.28
CUX1P39880 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC29.29■■■□□ 2.28
CUX1P39880 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC29.29■■■□□ 2.28
CUX1P39880 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
CUX1P39880 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC29.28■■■□□ 2.28
CUX1P39880 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CUX1P39880 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CUX1P39880 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
CUX1P39880 AC093214.1-201ENST00000511688 1107 ntBASIC29.28■■■□□ 2.28
CUX1P39880 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CUX1P39880 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC29.28■■■□□ 2.28
CUX1P39880 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC29.28■■■□□ 2.28
CUX1P39880 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC29.28■■■□□ 2.28
CUX1P39880 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
CUX1P39880 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CUX1P39880 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
CUX1P39880 AC135776.1-201ENST00000319817 2481 ntBASIC29.27■■■□□ 2.28
CUX1P39880 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CUX1P39880 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC29.27■■■□□ 2.28
CUX1P39880 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CUX1P39880 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CUX1P39880 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CUX1P39880 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CUX1P39880 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC29.27■■■□□ 2.28
CUX1P39880 NABP1-203ENST00000409510 843 ntTSL 5 BASIC29.27■■■□□ 2.28
CUX1P39880 FAM58DP-201ENST00000428076 619 ntBASIC29.27■■■□□ 2.28
CUX1P39880 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC29.27■■■□□ 2.28
CUX1P39880 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
CUX1P39880 DUT-210ENST00000559935 569 ntTSL 3 BASIC29.27■■■□□ 2.28
CUX1P39880 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CUX1P39880 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC29.27■■■□□ 2.28
CUX1P39880 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC29.27■■■□□ 2.28
CUX1P39880 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CUX1P39880 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC29.27■■■□□ 2.28
CUX1P39880 HARS-203ENST00000431330 1774 ntTSL 2 BASIC29.27■■■□□ 2.28
CUX1P39880 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
CUX1P39880 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CUX1P39880 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
CUX1P39880 PMS2P4-201ENST00000412466 1052 ntBASIC29.26■■■□□ 2.27
CUX1P39880 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC29.26■■■□□ 2.27
CUX1P39880 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
CUX1P39880 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
CUX1P39880 AC069262.1-201ENST00000539058 672 ntBASIC29.26■■■□□ 2.27
CUX1P39880 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC29.26■■■□□ 2.27
CUX1P39880 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC29.26■■■□□ 2.27
CUX1P39880 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC29.26■■■□□ 2.27
CUX1P39880 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
CUX1P39880 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
CUX1P39880 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC29.26■■■□□ 2.27
CUX1P39880 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC29.26■■■□□ 2.27
CUX1P39880 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC29.26■■■□□ 2.27
CUX1P39880 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
CUX1P39880 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CUX1P39880 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC29.26■■■□□ 2.27
CUX1P39880 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX1P39880 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX1P39880 AC069335.1-201ENST00000489972 472 ntBASIC29.25■■■□□ 2.27
CUX1P39880 AC067863.1-201ENST00000494933 530 ntBASIC29.25■■■□□ 2.27
CUX1P39880 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC29.25■■■□□ 2.27
CUX1P39880 AL135744.1-201ENST00000565098 629 ntBASIC29.25■■■□□ 2.27
CUX1P39880 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CUX1P39880 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC29.25■■■□□ 2.27
CUX1P39880 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC29.25■■■□□ 2.27
CUX1P39880 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX1P39880 AMT-250ENST00000637682 1823 ntTSL 5 BASIC29.25■■■□□ 2.27
CUX1P39880 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX1P39880 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX1P39880 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
CUX1P39880 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC29.25■■■□□ 2.27
CUX1P39880 YTHDF3-AS1-201ENST00000603538 718 ntBASIC29.25■■■□□ 2.27
CUX1P39880 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
CUX1P39880 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX1P39880 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC29.24■■■□□ 2.27
CUX1P39880 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC29.24■■■□□ 2.27
CUX1P39880 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CUX1P39880 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC29.24■■■□□ 2.27
CUX1P39880 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX1P39880 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CUX1P39880 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CUX1P39880 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC29.24■■■□□ 2.27
CUX1P39880 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC29.24■■■□□ 2.27
CUX1P39880 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CUX1P39880 KRT18P32-201ENST00000424695 1287 ntBASIC29.24■■■□□ 2.27
CUX1P39880 UGT1A2P-201ENST00000454886 866 ntBASIC29.24■■■□□ 2.27
CUX1P39880 AP001059.3-201ENST00000619053 235 ntBASIC29.24■■■□□ 2.27
CUX1P39880 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC29.24■■■□□ 2.27
CUX1P39880 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
CUX1P39880 REXO1L11P-201ENST00000620964 1927 ntBASIC29.23■■■□□ 2.27
CUX1P39880 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX1P39880 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX1P39880 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX1P39880 AC002056.1-201ENST00000395613 760 ntBASIC29.23■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms