Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
ABCD3P28288 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.29■□□□□ 0.2
ABCD3P28288 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.29■□□□□ 0.2
ABCD3P28288 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.29■□□□□ 0.2
ABCD3P28288 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
ABCD3P28288 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.29■□□□□ 0.2
ABCD3P28288 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ABCD3P28288 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.29■□□□□ 0.2
ABCD3P28288 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.29■□□□□ 0.2
ABCD3P28288 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ABCD3P28288 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 REXO1L11P-201ENST00000620964 1927 ntBASIC16.29■□□□□ 0.2
ABCD3P28288 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCD3P28288 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
ABCD3P28288 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ABCD3P28288 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 AL450487.1-201ENST00000426799 995 ntBASIC16.28■□□□□ 0.2
ABCD3P28288 AC103564.2-201ENST00000432853 1299 ntBASIC16.28■□□□□ 0.2
ABCD3P28288 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCD3P28288 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCD3P28288 KRT126P-201ENST00000549467 1181 ntBASIC16.28■□□□□ 0.2
ABCD3P28288 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.28■□□□□ 0.2
ABCD3P28288 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.28■□□□□ 0.2
ABCD3P28288 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.28■□□□□ 0.2
ABCD3P28288 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.28■□□□□ 0.2
ABCD3P28288 LINC01711-201ENST00000598340 967 ntBASIC16.28■□□□□ 0.2
ABCD3P28288 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.28■□□□□ 0.2
ABCD3P28288 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCD3P28288 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
ABCD3P28288 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCD3P28288 SIRPAP1-201ENST00000448467 1770 ntBASIC16.28■□□□□ 0.2
ABCD3P28288 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCD3P28288 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ABCD3P28288 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCD3P28288 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
ABCD3P28288 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.27■□□□□ 0.2
ABCD3P28288 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ABCD3P28288 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.27■□□□□ 0.2
ABCD3P28288 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
ABCD3P28288 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.27■□□□□ 0.2
ABCD3P28288 GNAS-203ENST00000306120 1878 ntBASIC16.27■□□□□ 0.2
ABCD3P28288 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
ABCD3P28288 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCD3P28288 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
ABCD3P28288 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCD3P28288 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCD3P28288 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCD3P28288 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCD3P28288 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.27■□□□□ 0.2
ABCD3P28288 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.27■□□□□ 0.2
ABCD3P28288 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.27■□□□□ 0.2
ABCD3P28288 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCD3P28288 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.27■□□□□ 0.2
ABCD3P28288 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.27■□□□□ 0.2
ABCD3P28288 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCD3P28288 AC111152.3-201ENST00000569699 673 ntBASIC16.27■□□□□ 0.2
ABCD3P28288 IFNL4P1-201ENST00000607083 540 ntBASIC16.27■□□□□ 0.2
ABCD3P28288 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
ABCD3P28288 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCD3P28288 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
ABCD3P28288 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
ABCD3P28288 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
ABCD3P28288 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
ABCD3P28288 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.27■□□□□ 0.19
ABCD3P28288 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ABCD3P28288 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ABCD3P28288 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
ABCD3P28288 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
ABCD3P28288 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ABCD3P28288 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
ABCD3P28288 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms