Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
HMGB1P09429 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGB1P09429 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HMGB1P09429 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HMGB1P09429 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.84■□□□□ 0.93
HMGB1P09429 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.84■□□□□ 0.93
HMGB1P09429 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.84■□□□□ 0.93
HMGB1P09429 AP002383.4-201ENST00000442518 975 ntBASIC20.84■□□□□ 0.93
HMGB1P09429 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.84■□□□□ 0.93
HMGB1P09429 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.84■□□□□ 0.93
HMGB1P09429 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGB1P09429 TPSP2-201ENST00000561760 610 ntBASIC20.84■□□□□ 0.93
HMGB1P09429 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGB1P09429 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.84■□□□□ 0.93
HMGB1P09429 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HMGB1P09429 Z69720.1-201ENST00000601483 472 ntBASIC20.84■□□□□ 0.93
HMGB1P09429 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.84■□□□□ 0.93
HMGB1P09429 AL139327.4-201ENST00000612362 153 ntBASIC20.84■□□□□ 0.93
HMGB1P09429 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.84■□□□□ 0.93
HMGB1P09429 AL358472.4-201ENST00000633140 710 ntBASIC20.84■□□□□ 0.93
HMGB1P09429 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.84■□□□□ 0.93
HMGB1P09429 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
HMGB1P09429 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 LYSMD4-203ENST00000378904 2122 ntBASIC20.84■□□□□ 0.93
HMGB1P09429 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
HMGB1P09429 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HMGB1P09429 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HMGB1P09429 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.83■□□□□ 0.93
HMGB1P09429 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.83■□□□□ 0.93
HMGB1P09429 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
HMGB1P09429 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
HMGB1P09429 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.83■□□□□ 0.93
HMGB1P09429 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.83■□□□□ 0.93
HMGB1P09429 IGHV3-52-201ENST00000519770 353 ntBASIC20.83■□□□□ 0.93
HMGB1P09429 AP002414.4-201ENST00000589764 1148 ntBASIC20.83■□□□□ 0.93
HMGB1P09429 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 AL445228.2-201ENST00000605589 952 ntBASIC20.83■□□□□ 0.93
HMGB1P09429 AC019129.2-201ENST00000609837 1235 ntBASIC20.83■□□□□ 0.93
HMGB1P09429 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGB1P09429 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.83■□□□□ 0.93
HMGB1P09429 AC016396.2-201ENST00000562575 1417 ntBASIC20.83■□□□□ 0.93
HMGB1P09429 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.83■□□□□ 0.92
HMGB1P09429 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.83■□□□□ 0.92
HMGB1P09429 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HMGB1P09429 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HMGB1P09429 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HMGB1P09429 ARMC10P1-201ENST00000313754 855 ntBASIC20.82■□□□□ 0.92
HMGB1P09429 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HMGB1P09429 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.82■□□□□ 0.92
HMGB1P09429 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HMGB1P09429 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.82■□□□□ 0.92
HMGB1P09429 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.82■□□□□ 0.92
HMGB1P09429 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.82■□□□□ 0.92
HMGB1P09429 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
HMGB1P09429 AP005901.3-202ENST00000581653 237 ntBASIC20.82■□□□□ 0.92
HMGB1P09429 AC069148.1-201ENST00000608741 768 ntBASIC20.82■□□□□ 0.92
HMGB1P09429 AC010331.1-201ENST00000611423 582 ntBASIC20.82■□□□□ 0.92
HMGB1P09429 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HMGB1P09429 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
HMGB1P09429 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGB1P09429 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HMGB1P09429 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 CROCCP2-202ENST00000412962 2773 ntBASIC20.81■□□□□ 0.92
HMGB1P09429 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
HMGB1P09429 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HMGB1P09429 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms