Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.73■□□□□ 0.11
CNOT4O95628 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.73■□□□□ 0.11
CNOT4O95628 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
CNOT4O95628 AC011467.2-201ENST00000598425 242 ntBASIC15.73■□□□□ 0.11
CNOT4O95628 AC104692.2-201ENST00000603054 253 ntBASIC15.73■□□□□ 0.11
CNOT4O95628 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CNOT4O95628 AC135050.7-201ENST00000624508 2218 ntBASIC15.73■□□□□ 0.11
CNOT4O95628 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15.73■□□□□ 0.11
CNOT4O95628 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CNOT4O95628 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CNOT4O95628 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.73■□□□□ 0.11
CNOT4O95628 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC15.73■□□□□ 0.11
CNOT4O95628 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC15.73■□□□□ 0.11
CNOT4O95628 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
CNOT4O95628 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.72■□□□□ 0.11
CNOT4O95628 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.72■□□□□ 0.11
CNOT4O95628 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
CNOT4O95628 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC15.72■□□□□ 0.11
CNOT4O95628 AC079781.3-201ENST00000449110 356 ntBASIC15.72■□□□□ 0.11
CNOT4O95628 AC096582.2-201ENST00000510860 516 ntBASIC15.72■□□□□ 0.11
CNOT4O95628 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.72■□□□□ 0.11
CNOT4O95628 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CNOT4O95628 AC138894.3-201ENST00000603787 634 ntBASIC15.72■□□□□ 0.11
CNOT4O95628 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.72■□□□□ 0.11
CNOT4O95628 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.72■□□□□ 0.11
CNOT4O95628 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.72■□□□□ 0.11
CNOT4O95628 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CNOT4O95628 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CNOT4O95628 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CNOT4O95628 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.72■□□□□ 0.11
CNOT4O95628 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CNOT4O95628 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
CNOT4O95628 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.71■□□□□ 0.11
CNOT4O95628 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.71■□□□□ 0.11
CNOT4O95628 AC079776.4-201ENST00000511039 504 ntBASIC15.71■□□□□ 0.11
CNOT4O95628 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.71■□□□□ 0.11
CNOT4O95628 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.71■□□□□ 0.11
CNOT4O95628 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC15.71■□□□□ 0.11
CNOT4O95628 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CNOT4O95628 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.71■□□□□ 0.11
CNOT4O95628 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.71■□□□□ 0.11
CNOT4O95628 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CNOT4O95628 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CNOT4O95628 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CNOT4O95628 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CNOT4O95628 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
CNOT4O95628 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms